Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 142838 | 0.67 | 0.327252 |
Target: 5'- uCCCGccCCCGCGUuuuccauuGGggugaauggggaGGGGCCCCCagCg -3' miRNA: 3'- -GGGCu-GGGCGCG--------CC------------CCCCGGGGGagG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 142149 | 0.73 | 0.128346 |
Target: 5'- gCCUGcGCCgGCGCaGGGGGCUCguccaCCUCCa -3' miRNA: 3'- -GGGC-UGGgCGCGcCCCCCGGG-----GGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 142095 | 0.67 | 0.354983 |
Target: 5'- gCCCgcagGACCUGCGCGGGcuGGGUgaagCCCaCCg -3' miRNA: 3'- -GGG----CUGGGCGCGCCC--CCCGg---GGGaGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 141839 | 0.68 | 0.288725 |
Target: 5'- uCCCGcGCUCGaCGCGaGGGGCUcgcgccgcgCCCUCUg -3' miRNA: 3'- -GGGC-UGGGC-GCGCcCCCCGG---------GGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 141641 | 0.68 | 0.276698 |
Target: 5'- gCCGcGgCgGCGCGGcGGGGCCCCgcgggCUCg -3' miRNA: 3'- gGGC-UgGgCGCGCC-CCCCGGGG-----GAGg -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 139637 | 0.69 | 0.247846 |
Target: 5'- aUCCGGCgCCgGCGCGGGGGucgcggcgggcgcGCCgCCCgacaggCCc -3' miRNA: 3'- -GGGCUG-GG-CGCGCCCCC-------------CGG-GGGa-----GG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 137425 | 0.71 | 0.18591 |
Target: 5'- gCCG--CCGcCGCGGGGuccgccuccgcGGCCUCCUCCg -3' miRNA: 3'- gGGCugGGC-GCGCCCC-----------CCGGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 137401 | 0.79 | 0.046486 |
Target: 5'- gCCUG-CCCGC-CGGGGGGCgCCCUCg -3' miRNA: 3'- -GGGCuGGGCGcGCCCCCCGgGGGAGg -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 136819 | 0.66 | 0.369458 |
Target: 5'- gCCGACgcgCCGCGCGGGcucugcgacGcGGCCgCCggCCu -3' miRNA: 3'- gGGCUG---GGCGCGCCC---------C-CCGGgGGa-GG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 136631 | 0.67 | 0.333349 |
Target: 5'- aCgGACCC-CGCGGcgcccguGGGGCgcucgCCCCUCg -3' miRNA: 3'- gGgCUGGGcGCGCC-------CCCCG-----GGGGAGg -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 135915 | 0.66 | 0.385085 |
Target: 5'- cCCCGGCggucgugcgcgcgcuCUGcCGCGGGGaGCCCCUcgcggcgcgggacgUCCu -3' miRNA: 3'- -GGGCUG---------------GGC-GCGCCCCcCGGGGG--------------AGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 135031 | 0.72 | 0.169285 |
Target: 5'- gCgGGgCCGCGUcguccucGGGGcGGuCCCCCUCCu -3' miRNA: 3'- gGgCUgGGCGCG-------CCCC-CC-GGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 134834 | 0.7 | 0.222515 |
Target: 5'- -gCGACCgCGCGCGcacacacgcGGGGCCCgCUCUu -3' miRNA: 3'- ggGCUGG-GCGCGCc--------CCCCGGGgGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 134751 | 0.69 | 0.259414 |
Target: 5'- cCCCGAgCagCGCGCGcGGGGCCCgCggcuucggCUCCa -3' miRNA: 3'- -GGGCUgG--GCGCGCcCCCCGGG-G--------GAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 133153 | 0.67 | 0.347898 |
Target: 5'- aCUCGGCggCgGCGCGGGcguGGGCCUCggCCa -3' miRNA: 3'- -GGGCUG--GgCGCGCCC---CCCGGGGgaGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 133004 | 0.67 | 0.354983 |
Target: 5'- uCCCu-UCCGCcCGGGGGuGCUCUCgUCCa -3' miRNA: 3'- -GGGcuGGGCGcGCCCCC-CGGGGG-AGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 131114 | 0.68 | 0.282661 |
Target: 5'- gCCCGGCCgCgGCGCGGGaGGCCgCggcgCCg -3' miRNA: 3'- -GGGCUGG-G-CGCGCCCcCCGGgGga--GG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 130925 | 0.66 | 0.383578 |
Target: 5'- gCCgGGCCCGCgggggcgggggcgGCGGGGGGUCgCg--- -3' miRNA: 3'- -GGgCUGGGCG-------------CGCCCCCCGGgGgagg -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 127794 | 0.7 | 0.217623 |
Target: 5'- cCCCGccGCCgCGCGCGGGGGcGCgaggUCCUUgCg -3' miRNA: 3'- -GGGC--UGG-GCGCGCCCCC-CG----GGGGAgG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 127725 | 0.74 | 0.122433 |
Target: 5'- cCCCGGcgucCCCGuCGCGGGcGGGaaccggucauCCUCCUCCu -3' miRNA: 3'- -GGGCU----GGGC-GCGCCC-CCC----------GGGGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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