miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29503 3' -54.9 NC_006151.1 + 141771 0.67 0.890368
Target:  5'- uGGCGUCGCcggUUCUgUCCCGGGGAcGCg -3'
miRNA:   3'- gCUGCAGCGu--GAGGaGGGGUUUCU-CG- -5'
29503 3' -54.9 NC_006151.1 + 36037 0.67 0.890368
Target:  5'- cCGGCGcCGCgGCUCCUCCggCGAGGAu- -3'
miRNA:   3'- -GCUGCaGCG-UGAGGAGGg-GUUUCUcg -5'
29503 3' -54.9 NC_006151.1 + 117867 0.67 0.890368
Target:  5'- cCGACGUCGCGUUCg-CCCCucGGcGCc -3'
miRNA:   3'- -GCUGCAGCGUGAGgaGGGGuuUCuCG- -5'
29503 3' -54.9 NC_006151.1 + 101112 0.67 0.887645
Target:  5'- gGGCGUCucgugccuGCGCUCCUCCCUcuccuuccuGCg -3'
miRNA:   3'- gCUGCAG--------CGUGAGGAGGGGuuucu----CG- -5'
29503 3' -54.9 NC_006151.1 + 33971 0.68 0.883494
Target:  5'- gCGGCGccCGCGCggggacacucuuUCC-CCCgGAGGGGCg -3'
miRNA:   3'- -GCUGCa-GCGUG------------AGGaGGGgUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 127774 0.68 0.883494
Target:  5'- uCGuCGUCGCcCUCCcccucCCCCGccgccgcgcgcGGGGGCg -3'
miRNA:   3'- -GCuGCAGCGuGAGGa----GGGGU-----------UUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 8301 0.68 0.883494
Target:  5'- gGGCGcCGCG-UCCcgCCCCGAgcccccGGGGCg -3'
miRNA:   3'- gCUGCaGCGUgAGGa-GGGGUU------UCUCG- -5'
29503 3' -54.9 NC_006151.1 + 102244 0.68 0.883494
Target:  5'- cCGuCGcCGCGCUCUUCgagCCCAuccuGGGCg -3'
miRNA:   3'- -GCuGCaGCGUGAGGAG---GGGUuu--CUCG- -5'
29503 3' -54.9 NC_006151.1 + 20412 0.68 0.882092
Target:  5'- cCGuCGUCGCccccuccucgucCUCCUCCUCuucgucGGAGCg -3'
miRNA:   3'- -GCuGCAGCGu-----------GAGGAGGGGuu----UCUCG- -5'
29503 3' -54.9 NC_006151.1 + 114963 0.68 0.879262
Target:  5'- uGACGUaggacaCGCGCUCCuugacgcucggcaccUCCCCGuGGcGCa -3'
miRNA:   3'- gCUGCA------GCGUGAGG---------------AGGGGUuUCuCG- -5'
29503 3' -54.9 NC_006151.1 + 115127 0.68 0.876396
Target:  5'- gCGACG-CGCGCgugcgCCUCggccagcacgcgCCCGAAG-GCg -3'
miRNA:   3'- -GCUGCaGCGUGa----GGAG------------GGGUUUCuCG- -5'
29503 3' -54.9 NC_006151.1 + 37406 0.68 0.876396
Target:  5'- aCGGCGgCGC-CggggaCUCCCgCGAGGGGCu -3'
miRNA:   3'- -GCUGCaGCGuGag---GAGGG-GUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 128191 0.68 0.869079
Target:  5'- gCGAgCGUgcCGCGCUCCauggcgCCCCAGGcgugcgacGAGCu -3'
miRNA:   3'- -GCU-GCA--GCGUGAGGa-----GGGGUUU--------CUCG- -5'
29503 3' -54.9 NC_006151.1 + 133295 0.68 0.869079
Target:  5'- -cACGUCGaGgUUCUCCCCGGGG-GCg -3'
miRNA:   3'- gcUGCAGCgUgAGGAGGGGUUUCuCG- -5'
29503 3' -54.9 NC_006151.1 + 141862 0.68 0.869079
Target:  5'- -cGCGcCGCGC-CCUCUggugCCGGAGGGCc -3'
miRNA:   3'- gcUGCaGCGUGaGGAGG----GGUUUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 31473 0.68 0.861547
Target:  5'- cCGGCaUCGguCUCC-CCCCAAaacGGAGa -3'
miRNA:   3'- -GCUGcAGCguGAGGaGGGGUU---UCUCg -5'
29503 3' -54.9 NC_006151.1 + 39072 0.68 0.861547
Target:  5'- gCGugGUgGUGCUCUacgacccgcugCCCCAcgAGGAGCu -3'
miRNA:   3'- -GCugCAgCGUGAGGa----------GGGGU--UUCUCG- -5'
29503 3' -54.9 NC_006151.1 + 6636 0.68 0.853808
Target:  5'- aCGAUGgagacCGCGCUUauaagcgCCCCGAGGAGa -3'
miRNA:   3'- -GCUGCa----GCGUGAGga-----GGGGUUUCUCg -5'
29503 3' -54.9 NC_006151.1 + 18298 0.68 0.853808
Target:  5'- aGACGUCGaagccggaGCggggcgCCUCCUCGGGGcGCa -3'
miRNA:   3'- gCUGCAGCg-------UGa-----GGAGGGGUUUCuCG- -5'
29503 3' -54.9 NC_006151.1 + 100730 0.68 0.853808
Target:  5'- aGGCGccgccCGCGCccgCCUUcacgCCCGAGGAGCu -3'
miRNA:   3'- gCUGCa----GCGUGa--GGAG----GGGUUUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.