Results 1 - 20 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29503 | 5' | -63.8 | NC_006151.1 | + | 142292 | 0.68 | 0.473551 |
Target: 5'- aGACCGGcCGGGacGAGAGcGA-GCGCcguauGGGg -3' miRNA: 3'- aCUGGCC-GCCC--CUCUC-CUgCGCG-----CCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 141701 | 0.67 | 0.525145 |
Target: 5'- cGGCUGGCGGcggacgcggugcccGGGGcguuaauacccAGGGCggagggGCGCGGGg -3' miRNA: 3'- aCUGGCCGCC--------------CCUC-----------UCCUG------CGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 140443 | 0.66 | 0.584448 |
Target: 5'- gUGcCCGGCGccugccucggcGGGAucauGGACGCGCuGGa -3' miRNA: 3'- -ACuGGCCGC-----------CCCUcu--CCUGCGCGcCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 139643 | 0.68 | 0.438908 |
Target: 5'- -cGCCGGCGcGGGGGucgcggcGGGCGCGCc-- -3' miRNA: 3'- acUGGCCGC-CCCUCu------CCUGCGCGccc -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 137589 | 0.7 | 0.374231 |
Target: 5'- cGACgaGGuCGGGGucgggaucGGGGGCGCggGCGGGg -3' miRNA: 3'- aCUGg-CC-GCCCCu-------CUCCUGCG--CGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 137105 | 0.72 | 0.277505 |
Target: 5'- -uGCUGGcCGGGGAcgccuGGGGGCGCGCGa- -3' miRNA: 3'- acUGGCC-GCCCCU-----CUCCUGCGCGCcc -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 135100 | 0.76 | 0.151829 |
Target: 5'- gGGCCgGGCGGGcGGcGGuaGCGCGCGGGg -3' miRNA: 3'- aCUGG-CCGCCCcUCuCC--UGCGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 134997 | 0.7 | 0.359101 |
Target: 5'- gGGCgcgucuUGGCGGGGgcgcgGGGGGGCaGCaGCGGGg -3' miRNA: 3'- aCUG------GCCGCCCC-----UCUCCUG-CG-CGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 134726 | 0.65 | 0.61223 |
Target: 5'- gUGGCCuucgcGCGGGacuuugucgccccGAGcAGcGCGCGCGGGg -3' miRNA: 3'- -ACUGGc----CGCCC-------------CUC-UCcUGCGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 133976 | 0.66 | 0.57492 |
Target: 5'- cGGCCccuCGGuGGAGAcgauGGAagagaGCGCGGGg -3' miRNA: 3'- aCUGGcc-GCC-CCUCU----CCUg----CGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 133740 | 0.67 | 0.527923 |
Target: 5'- cGAgCGaGUGGGGuc-GGGCGCGUGcGGa -3' miRNA: 3'- aCUgGC-CGCCCCucuCCUGCGCGC-CC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 133402 | 0.7 | 0.351698 |
Target: 5'- gGGCCGaGCGGGcGGucuuggccgcGGACGCGgGGGu -3' miRNA: 3'- aCUGGC-CGCCCcUCu---------CCUGCGCgCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 131945 | 0.67 | 0.518686 |
Target: 5'- -aGCUGGCcacGGGcGAGGGCGgGCGGc -3' miRNA: 3'- acUGGCCGc--CCCuCUCCUGCgCGCCc -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 131705 | 0.7 | 0.359101 |
Target: 5'- uUGAgCGcgucGCGGGGGauGAGGugGUagGCGGGg -3' miRNA: 3'- -ACUgGC----CGCCCCU--CUCCugCG--CGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 131103 | 0.71 | 0.296422 |
Target: 5'- --gUCGGCGGGGGGcccGGccGCgGCGCGGGa -3' miRNA: 3'- acuGGCCGCCCCUCu--CC--UG-CGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 130943 | 0.79 | 0.092989 |
Target: 5'- gGGgCGGCGGGGGGucgcgcGGGCGCGgGGGc -3' miRNA: 3'- aCUgGCCGCCCCUCu-----CCUGCGCgCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 130265 | 0.66 | 0.584448 |
Target: 5'- aGGCCGGCGcGcGGccccGAGG-C-CGCGGGc -3' miRNA: 3'- aCUGGCCGC-C-CCu---CUCCuGcGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 129792 | 0.68 | 0.479755 |
Target: 5'- -cGCCGGCGuGGGcccgcauGAGGcccgugagcgcggaGCGCGCGGcGg -3' miRNA: 3'- acUGGCCGC-CCCu------CUCC--------------UGCGCGCC-C- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 129460 | 0.68 | 0.442308 |
Target: 5'- cGGCCgugGGCGGGacgaGcccguccagguccucGGAGGGCaGCGCGGGc -3' miRNA: 3'- aCUGG---CCGCCC----C---------------UCUCCUG-CGCGCCC- -5' |
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29503 | 5' | -63.8 | NC_006151.1 | + | 127365 | 0.73 | 0.226533 |
Target: 5'- -cGCCcugGGCGGGGAccgcgGGGGugGCGgGGGc -3' miRNA: 3'- acUGG---CCGCCCCU-----CUCCugCGCgCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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