miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29503 5' -63.8 NC_006151.1 + 64478 0.67 0.546573
Target:  5'- cGcCgCGGCGGGGAcgcccGcGGGCGCgggcgGCGGGc -3'
miRNA:   3'- aCuG-GCCGCCCCU-----CuCCUGCG-----CGCCC- -5'
29503 5' -63.8 NC_006151.1 + 77923 0.67 0.546573
Target:  5'- cGGCCguGGUGGugaaGGGcGGGCGCGCGGc -3'
miRNA:   3'- aCUGG--CCGCCc---CUCuCCUGCGCGCCc -5'
29503 5' -63.8 NC_006151.1 + 21029 0.67 0.546573
Target:  5'- -cGCCGGCGccccuGaAGAGGAcgcccccgaCGCGCGGGg -3'
miRNA:   3'- acUGGCCGCc----CcUCUCCU---------GCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 11741 0.67 0.53722
Target:  5'- ----gGGUGaGGGGGAGGG-GUGCGGGc -3'
miRNA:   3'- acuggCCGC-CCCUCUCCUgCGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 58645 0.67 0.53722
Target:  5'- aGGCCaGCGccGGGAGGGCGCGgcgcaGGGc -3'
miRNA:   3'- aCUGGcCGCccCUCUCCUGCGCg----CCC- -5'
29503 5' -63.8 NC_006151.1 + 3997 0.67 0.53722
Target:  5'- cGGCCacguuGGcCGGGGcgaAGAGGGC-CGCGGc -3'
miRNA:   3'- aCUGG-----CC-GCCCC---UCUCCUGcGCGCCc -5'
29503 5' -63.8 NC_006151.1 + 22508 0.67 0.53722
Target:  5'- aGAgaGGgGGGGAaucgcgGGGGAguCGgGCGGGg -3'
miRNA:   3'- aCUggCCgCCCCU------CUCCU--GCgCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 52368 0.67 0.53722
Target:  5'- -cGCCGGCgcgcccccGGGGcccgcGGGGGCG-GCGGGc -3'
miRNA:   3'- acUGGCCG--------CCCCu----CUCCUGCgCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 75134 0.67 0.53722
Target:  5'- cGGCCGGCGGcgcGGcccAGcgcGGGCGCaCGGGc -3'
miRNA:   3'- aCUGGCCGCC---CC---UCu--CCUGCGcGCCC- -5'
29503 5' -63.8 NC_006151.1 + 79277 0.67 0.53722
Target:  5'- -cGCCGcGCGGcguccGGAGAGGAgaguccCGCGCcccGGGa -3'
miRNA:   3'- acUGGC-CGCC-----CCUCUCCU------GCGCG---CCC- -5'
29503 5' -63.8 NC_006151.1 + 90764 0.67 0.53722
Target:  5'- gGGCaCGGUGGcGGGGucggcGGGCGCGCa-- -3'
miRNA:   3'- aCUG-GCCGCC-CCUCu----CCUGCGCGccc -5'
29503 5' -63.8 NC_006151.1 + 80428 0.67 0.53722
Target:  5'- aUGugU-GCGGGGAGAGaGugGUGUauacucGGGg -3'
miRNA:   3'- -ACugGcCGCCCCUCUC-CugCGCG------CCC- -5'
29503 5' -63.8 NC_006151.1 + 98334 0.67 0.536288
Target:  5'- aUGGCC-GCGGGccgcGAGAcgcccgcGGGCGUGCGcGGg -3'
miRNA:   3'- -ACUGGcCGCCC----CUCU-------CCUGCGCGC-CC- -5'
29503 5' -63.8 NC_006151.1 + 78530 0.67 0.52885
Target:  5'- gGAcCCGGCGGGGgccucgccgccgacGacgaagcacgcccggGAGGACGCGgcgaCGGGc -3'
miRNA:   3'- aCU-GGCCGCCCC--------------U---------------CUCCUGCGC----GCCC- -5'
29503 5' -63.8 NC_006151.1 + 56331 0.67 0.527923
Target:  5'- gGGCCGGUGGcuGGAGcGCGCGCGc- -3'
miRNA:   3'- aCUGGCCGCCccUCUCcUGCGCGCcc -5'
29503 5' -63.8 NC_006151.1 + 133740 0.67 0.527923
Target:  5'- cGAgCGaGUGGGGuc-GGGCGCGUGcGGa -3'
miRNA:   3'- aCUgGC-CGCCCCucuCCUGCGCGC-CC- -5'
29503 5' -63.8 NC_006151.1 + 141701 0.67 0.525145
Target:  5'- cGGCUGGCGGcggacgcggugcccGGGGcguuaauacccAGGGCggagggGCGCGGGg -3'
miRNA:   3'- aCUGGCCGCC--------------CCUC-----------UCCUG------CGCGCCC- -5'
29503 5' -63.8 NC_006151.1 + 31937 0.67 0.518686
Target:  5'- gGACCGG-GGGGucccgcguGAuGACGC-CGGGg -3'
miRNA:   3'- aCUGGCCgCCCCu-------CUcCUGCGcGCCC- -5'
29503 5' -63.8 NC_006151.1 + 131945 0.67 0.518686
Target:  5'- -aGCUGGCcacGGGcGAGGGCGgGCGGc -3'
miRNA:   3'- acUGGCCGc--CCCuCUCCUGCgCGCCc -5'
29503 5' -63.8 NC_006151.1 + 110684 0.67 0.518686
Target:  5'- aGACgCGGCGGuGGGGAGaucggggaaaGAC-CGgGGGa -3'
miRNA:   3'- aCUG-GCCGCC-CCUCUC----------CUGcGCgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.