miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 3' -55 NC_006151.1 + 118559 0.65 0.946866
Target:  5'- -cACGGUGUccaucaACGGGCacgaGGCGUggcgCGUGCc -3'
miRNA:   3'- gcUGCUACA------UGUCCGg---CCGCA----GCAUG- -5'
29504 3' -55 NC_006151.1 + 3117 0.65 0.946866
Target:  5'- gCGGCGcgGguccCAGGCCGgGCG-CGggGCg -3'
miRNA:   3'- -GCUGCuaCau--GUCCGGC-CGCaGCa-UG- -5'
29504 3' -55 NC_006151.1 + 127287 0.65 0.945108
Target:  5'- uGACGGgucgggggugcugGUACAGGCCGuCGUcCGcGCg -3'
miRNA:   3'- gCUGCUa------------CAUGUCCGGCcGCA-GCaUG- -5'
29504 3' -55 NC_006151.1 + 103629 0.66 0.942401
Target:  5'- cCGACGcgGUggcgGCGGcGCUGGCGgacgCGgACa -3'
miRNA:   3'- -GCUGCuaCA----UGUC-CGGCCGCa---GCaUG- -5'
29504 3' -55 NC_006151.1 + 97365 0.66 0.942401
Target:  5'- gCGGCGGcg-GCGGGCgCGGCGggggCGUcgGCc -3'
miRNA:   3'- -GCUGCUacaUGUCCG-GCCGCa---GCA--UG- -5'
29504 3' -55 NC_006151.1 + 89444 0.66 0.941942
Target:  5'- gCGACGGUcacGUACgccugcaccagcaGGGCCcGCGUcaCGUGCg -3'
miRNA:   3'- -GCUGCUA---CAUG-------------UCCGGcCGCA--GCAUG- -5'
29504 3' -55 NC_006151.1 + 111282 0.66 0.941016
Target:  5'- gGGCGGgggGUACGcGGCCuggcccacgaacgcGGCGgccgCGUGCc -3'
miRNA:   3'- gCUGCUa--CAUGU-CCGG--------------CCGCa---GCAUG- -5'
29504 3' -55 NC_006151.1 + 25060 0.66 0.939609
Target:  5'- uGAUGuccgaGUACAGGaucucgucggggauuCCGGCGUCGgcCa -3'
miRNA:   3'- gCUGCua---CAUGUCC---------------GGCCGCAGCauG- -5'
29504 3' -55 NC_006151.1 + 2894 0.66 0.9377
Target:  5'- uCGAUGGUGUcCAGcacgaugaGCCGGCGcCGcGCc -3'
miRNA:   3'- -GCUGCUACAuGUC--------CGGCCGCaGCaUG- -5'
29504 3' -55 NC_006151.1 + 3726 0.66 0.9377
Target:  5'- gGGCGcuggGUcCGGGCCGGCGgCGg-- -3'
miRNA:   3'- gCUGCua--CAuGUCCGGCCGCaGCaug -5'
29504 3' -55 NC_006151.1 + 22061 0.66 0.9377
Target:  5'- gCGAUGcgGUAcCAGGCCacgugGGCG-CgGUACg -3'
miRNA:   3'- -GCUGCuaCAU-GUCCGG-----CCGCaG-CAUG- -5'
29504 3' -55 NC_006151.1 + 20585 0.66 0.9377
Target:  5'- cCGACGA----CGGGCCGGCacUCGUccGCg -3'
miRNA:   3'- -GCUGCUacauGUCCGGCCGc-AGCA--UG- -5'
29504 3' -55 NC_006151.1 + 112031 0.66 0.93276
Target:  5'- cCGGCGGga-GCugGGGCCGGCGggCGgGCg -3'
miRNA:   3'- -GCUGCUacaUG--UCCGGCCGCa-GCaUG- -5'
29504 3' -55 NC_006151.1 + 19356 0.66 0.93276
Target:  5'- aGGCGucgugcagcGUGUAgAGGCCcGUGUCGUuggGCg -3'
miRNA:   3'- gCUGC---------UACAUgUCCGGcCGCAGCA---UG- -5'
29504 3' -55 NC_006151.1 + 55061 0.66 0.932252
Target:  5'- uCGGCGAggacccgGCGGGCucggccgCGGCGcgccUCGUGCg -3'
miRNA:   3'- -GCUGCUaca----UGUCCG-------GCCGC----AGCAUG- -5'
29504 3' -55 NC_006151.1 + 115994 0.66 0.92758
Target:  5'- gGAUGAUgcucggGUACAGGCUGGCaaaGUCcaGCa -3'
miRNA:   3'- gCUGCUA------CAUGUCCGGCCG---CAGcaUG- -5'
29504 3' -55 NC_006151.1 + 96668 0.66 0.927049
Target:  5'- gGGCGAcGUccucgggGCAGG-CGGCGUCGa-- -3'
miRNA:   3'- gCUGCUaCA-------UGUCCgGCCGCAGCaug -5'
29504 3' -55 NC_006151.1 + 99211 0.66 0.924357
Target:  5'- gGAgGcgGUGCAGGCCaGCGccucgccgcugcaggUCGUGg -3'
miRNA:   3'- gCUgCuaCAUGUCCGGcCGC---------------AGCAUg -5'
29504 3' -55 NC_006151.1 + 67728 0.66 0.92216
Target:  5'- aCGGCGcgGcgcACAGGCaCGGCG-CGgcgGCc -3'
miRNA:   3'- -GCUGCuaCa--UGUCCG-GCCGCaGCa--UG- -5'
29504 3' -55 NC_006151.1 + 36503 0.66 0.92216
Target:  5'- cCGGuCGGUGagccCGGGCCGGCGgcgCGg-- -3'
miRNA:   3'- -GCU-GCUACau--GUCCGGCCGCa--GCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.