miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 3' -55 NC_006151.1 + 23565 1.11 0.002757
Target:  5'- aCGACGAUGUACAGGCCGGCGUCGUACa -3'
miRNA:   3'- -GCUGCUACAUGUCCGGCCGCAGCAUG- -5'
29504 3' -55 NC_006151.1 + 59151 0.81 0.240065
Target:  5'- gGGCGG-GUcCAGGCCGGCGUCGcGCa -3'
miRNA:   3'- gCUGCUaCAuGUCCGGCCGCAGCaUG- -5'
29504 3' -55 NC_006151.1 + 3277 0.74 0.555989
Target:  5'- gCGGCGAUGUGCGccagggcGGCCGG-GUCGa-- -3'
miRNA:   3'- -GCUGCUACAUGU-------CCGGCCgCAGCaug -5'
29504 3' -55 NC_006151.1 + 18693 0.74 0.577198
Target:  5'- gGGCGcgcggGCGGcGCCGGCGUCGUGa -3'
miRNA:   3'- gCUGCuaca-UGUC-CGGCCGCAGCAUg -5'
29504 3' -55 NC_006151.1 + 26852 0.73 0.587363
Target:  5'- gCGACGGUGgugucCGaGCCGGCGUCGUc- -3'
miRNA:   3'- -GCUGCUACau---GUcCGGCCGCAGCAug -5'
29504 3' -55 NC_006151.1 + 104583 0.72 0.659014
Target:  5'- gGACG-UGcUGCAGGCCGGCGgcagcCGcgGCg -3'
miRNA:   3'- gCUGCuAC-AUGUCCGGCCGCa----GCa-UG- -5'
29504 3' -55 NC_006151.1 + 117175 0.72 0.668208
Target:  5'- aGACGcgGUAgaaGGGCCgccggggGGCGUCGUAg -3'
miRNA:   3'- gCUGCuaCAUg--UCCGG-------CCGCAGCAUg -5'
29504 3' -55 NC_006151.1 + 39345 0.72 0.679413
Target:  5'- uCGGCGcgGcGCGGcGCCGGCucaUCGUGCu -3'
miRNA:   3'- -GCUGCuaCaUGUC-CGGCCGc--AGCAUG- -5'
29504 3' -55 NC_006151.1 + 98671 0.72 0.679413
Target:  5'- cCGACGAcGUcCuGGCCGcgccccGCGUCGUGCc -3'
miRNA:   3'- -GCUGCUaCAuGuCCGGC------CGCAGCAUG- -5'
29504 3' -55 NC_006151.1 + 8583 0.71 0.709696
Target:  5'- gGugGGUGUGaGGGCCGGUGcgaGUAUg -3'
miRNA:   3'- gCugCUACAUgUCCGGCCGCag-CAUG- -5'
29504 3' -55 NC_006151.1 + 11689 0.71 0.709696
Target:  5'- cCGACGggGccGCGGGaCGGCG-CGUGCg -3'
miRNA:   3'- -GCUGCuaCa-UGUCCgGCCGCaGCAUG- -5'
29504 3' -55 NC_006151.1 + 89851 0.71 0.71967
Target:  5'- gCGugGGUGUGCGGGaCGGuCGccUCGUAg -3'
miRNA:   3'- -GCugCUACAUGUCCgGCC-GC--AGCAUg -5'
29504 3' -55 NC_006151.1 + 23884 0.71 0.729569
Target:  5'- gGGCGAgcggGUucACGGGCUgGGCGUCGgucGCg -3'
miRNA:   3'- gCUGCUa---CA--UGUCCGG-CCGCAGCa--UG- -5'
29504 3' -55 NC_006151.1 + 22633 0.7 0.749104
Target:  5'- aCGACGAc---CAGGCCGGCGagGgcgACg -3'
miRNA:   3'- -GCUGCUacauGUCCGGCCGCagCa--UG- -5'
29504 3' -55 NC_006151.1 + 58498 0.7 0.749104
Target:  5'- gGAUGAUGcccgcgcGCGGGCCGGCcUCGUc- -3'
miRNA:   3'- gCUGCUACa------UGUCCGGCCGcAGCAug -5'
29504 3' -55 NC_006151.1 + 99359 0.7 0.777609
Target:  5'- aCGGCGGUcGU-C-GG-CGGCGUCGUGCa -3'
miRNA:   3'- -GCUGCUA-CAuGuCCgGCCGCAGCAUG- -5'
29504 3' -55 NC_006151.1 + 33123 0.7 0.777609
Target:  5'- gGGCGcGUGccGCGGGCCGaGUGUCGgGCg -3'
miRNA:   3'- gCUGC-UACa-UGUCCGGC-CGCAGCaUG- -5'
29504 3' -55 NC_006151.1 + 103793 0.69 0.804939
Target:  5'- uGGCGgcGcUGCAGGCCGcGCuGUCGgcgGCc -3'
miRNA:   3'- gCUGCuaC-AUGUCCGGC-CG-CAGCa--UG- -5'
29504 3' -55 NC_006151.1 + 8238 0.69 0.830856
Target:  5'- cCGGCGGggagGgcCGGGCCGGCG-CGccgggACg -3'
miRNA:   3'- -GCUGCUa---CauGUCCGGCCGCaGCa----UG- -5'
29504 3' -55 NC_006151.1 + 91750 0.69 0.830856
Target:  5'- gGGCGAgcgGgcuCGGGCgGGCGgUGUGCg -3'
miRNA:   3'- gCUGCUa--Cau-GUCCGgCCGCaGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.