miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 3' -55 NC_006151.1 + 52033 0.69 0.830856
Target:  5'- uCGGCGA-----AGGCCGGCGccgucgCGUGCg -3'
miRNA:   3'- -GCUGCUacaugUCCGGCCGCa-----GCAUG- -5'
29504 3' -55 NC_006151.1 + 69840 0.69 0.838322
Target:  5'- -aGCGc-GUGCGGGCCGGCaggacucGUCGUAg -3'
miRNA:   3'- gcUGCuaCAUGUCCGGCCG-------CAGCAUg -5'
29504 3' -55 NC_006151.1 + 68766 0.68 0.86284
Target:  5'- cCGGCGGUG-GCGcGCgCGGCGagGUGCg -3'
miRNA:   3'- -GCUGCUACaUGUcCG-GCCGCagCAUG- -5'
29504 3' -55 NC_006151.1 + 26352 0.68 0.87033
Target:  5'- gGGCGGcg-GCGGGCCG-CGUCGggGCg -3'
miRNA:   3'- gCUGCUacaUGUCCGGCcGCAGCa-UG- -5'
29504 3' -55 NC_006151.1 + 141412 0.68 0.87033
Target:  5'- cCGGCGAUcgGUGCGGGCgcggccCGGCG-CGaACg -3'
miRNA:   3'- -GCUGCUA--CAUGUCCG------GCCGCaGCaUG- -5'
29504 3' -55 NC_006151.1 + 68065 0.68 0.87033
Target:  5'- uCGGCGAcGgGCAGGUCGGCGg---GCa -3'
miRNA:   3'- -GCUGCUaCaUGUCCGGCCGCagcaUG- -5'
29504 3' -55 NC_006151.1 + 61263 0.68 0.877606
Target:  5'- gGACGcgGcgGCAGG-CGGUaUCGUGCg -3'
miRNA:   3'- gCUGCuaCa-UGUCCgGCCGcAGCAUG- -5'
29504 3' -55 NC_006151.1 + 90125 0.68 0.877606
Target:  5'- uGACGAg--GCAGGCgGgGCGguaGUGCg -3'
miRNA:   3'- gCUGCUacaUGUCCGgC-CGCag-CAUG- -5'
29504 3' -55 NC_006151.1 + 113698 0.68 0.877606
Target:  5'- gGGCGcGUGUGCGGGgagcuguggaccCUGGCGUaCGUAUu -3'
miRNA:   3'- gCUGC-UACAUGUCC------------GGCCGCA-GCAUG- -5'
29504 3' -55 NC_006151.1 + 83602 0.68 0.884662
Target:  5'- aGGCGcGUGUgcagcaGCAGGUaCGGCGUCGcgaagGCg -3'
miRNA:   3'- gCUGC-UACA------UGUCCG-GCCGCAGCa----UG- -5'
29504 3' -55 NC_006151.1 + 89896 0.68 0.884662
Target:  5'- uCGGCGGUG---GGGUCGGCGUCc-GCg -3'
miRNA:   3'- -GCUGCUACaugUCCGGCCGCAGcaUG- -5'
29504 3' -55 NC_006151.1 + 44889 0.68 0.884662
Target:  5'- uCGGCGGUGUGCGG--UGGUGUgUGUGCg -3'
miRNA:   3'- -GCUGCUACAUGUCcgGCCGCA-GCAUG- -5'
29504 3' -55 NC_006151.1 + 127707 0.68 0.884662
Target:  5'- gCGACGAgcucGUGgAGGCCccGGCGUCc--- -3'
miRNA:   3'- -GCUGCUa---CAUgUCCGG--CCGCAGcaug -5'
29504 3' -55 NC_006151.1 + 125540 0.68 0.884662
Target:  5'- gCGugGAgGUGCGcGG-CGGCGUguaCGUGCa -3'
miRNA:   3'- -GCugCUaCAUGU-CCgGCCGCA---GCAUG- -5'
29504 3' -55 NC_006151.1 + 51750 0.67 0.891493
Target:  5'- aGACGcUGUucaugcGCAGGuuGGCGcgCGUGa -3'
miRNA:   3'- gCUGCuACA------UGUCCggCCGCa-GCAUg -5'
29504 3' -55 NC_006151.1 + 23527 0.67 0.891493
Target:  5'- aGACGGUGccgAGGuaGGCGUCGUcGCc -3'
miRNA:   3'- gCUGCUACaugUCCggCCGCAGCA-UG- -5'
29504 3' -55 NC_006151.1 + 107035 0.67 0.898096
Target:  5'- gCGGCGcgGcccCuGGCCGGCGagccggccugccUCGUGCu -3'
miRNA:   3'- -GCUGCuaCau-GuCCGGCCGC------------AGCAUG- -5'
29504 3' -55 NC_006151.1 + 52808 0.67 0.910602
Target:  5'- aGuuGGUGaUGC-GGCCGGCGUUGgccGCg -3'
miRNA:   3'- gCugCUAC-AUGuCCGGCCGCAGCa--UG- -5'
29504 3' -55 NC_006151.1 + 5110 0.67 0.910602
Target:  5'- aGACGGUG-GCGGcCCGGCG-CGgGCg -3'
miRNA:   3'- gCUGCUACaUGUCcGGCCGCaGCaUG- -5'
29504 3' -55 NC_006151.1 + 115092 0.67 0.910602
Target:  5'- uGACGAagucggccacGUcCAGGCCGGCGcCGccgGCg -3'
miRNA:   3'- gCUGCUa---------CAuGUCCGGCCGCaGCa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.