Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29504 | 3' | -55 | NC_006151.1 | + | 118559 | 0.65 | 0.946866 |
Target: 5'- -cACGGUGUccaucaACGGGCacgaGGCGUggcgCGUGCc -3' miRNA: 3'- gcUGCUACA------UGUCCGg---CCGCA----GCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 3117 | 0.65 | 0.946866 |
Target: 5'- gCGGCGcgGguccCAGGCCGgGCG-CGggGCg -3' miRNA: 3'- -GCUGCuaCau--GUCCGGC-CGCaGCa-UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 127287 | 0.65 | 0.945108 |
Target: 5'- uGACGGgucgggggugcugGUACAGGCCGuCGUcCGcGCg -3' miRNA: 3'- gCUGCUa------------CAUGUCCGGCcGCA-GCaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 103629 | 0.66 | 0.942401 |
Target: 5'- cCGACGcgGUggcgGCGGcGCUGGCGgacgCGgACa -3' miRNA: 3'- -GCUGCuaCA----UGUC-CGGCCGCa---GCaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 97365 | 0.66 | 0.942401 |
Target: 5'- gCGGCGGcg-GCGGGCgCGGCGggggCGUcgGCc -3' miRNA: 3'- -GCUGCUacaUGUCCG-GCCGCa---GCA--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 89444 | 0.66 | 0.941942 |
Target: 5'- gCGACGGUcacGUACgccugcaccagcaGGGCCcGCGUcaCGUGCg -3' miRNA: 3'- -GCUGCUA---CAUG-------------UCCGGcCGCA--GCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 111282 | 0.66 | 0.941016 |
Target: 5'- gGGCGGgggGUACGcGGCCuggcccacgaacgcGGCGgccgCGUGCc -3' miRNA: 3'- gCUGCUa--CAUGU-CCGG--------------CCGCa---GCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 25060 | 0.66 | 0.939609 |
Target: 5'- uGAUGuccgaGUACAGGaucucgucggggauuCCGGCGUCGgcCa -3' miRNA: 3'- gCUGCua---CAUGUCC---------------GGCCGCAGCauG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 2894 | 0.66 | 0.9377 |
Target: 5'- uCGAUGGUGUcCAGcacgaugaGCCGGCGcCGcGCc -3' miRNA: 3'- -GCUGCUACAuGUC--------CGGCCGCaGCaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 3726 | 0.66 | 0.9377 |
Target: 5'- gGGCGcuggGUcCGGGCCGGCGgCGg-- -3' miRNA: 3'- gCUGCua--CAuGUCCGGCCGCaGCaug -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 22061 | 0.66 | 0.9377 |
Target: 5'- gCGAUGcgGUAcCAGGCCacgugGGCG-CgGUACg -3' miRNA: 3'- -GCUGCuaCAU-GUCCGG-----CCGCaG-CAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 20585 | 0.66 | 0.9377 |
Target: 5'- cCGACGA----CGGGCCGGCacUCGUccGCg -3' miRNA: 3'- -GCUGCUacauGUCCGGCCGc-AGCA--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 112031 | 0.66 | 0.93276 |
Target: 5'- cCGGCGGga-GCugGGGCCGGCGggCGgGCg -3' miRNA: 3'- -GCUGCUacaUG--UCCGGCCGCa-GCaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 19356 | 0.66 | 0.93276 |
Target: 5'- aGGCGucgugcagcGUGUAgAGGCCcGUGUCGUuggGCg -3' miRNA: 3'- gCUGC---------UACAUgUCCGGcCGCAGCA---UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 55061 | 0.66 | 0.932252 |
Target: 5'- uCGGCGAggacccgGCGGGCucggccgCGGCGcgccUCGUGCg -3' miRNA: 3'- -GCUGCUaca----UGUCCG-------GCCGC----AGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 115994 | 0.66 | 0.92758 |
Target: 5'- gGAUGAUgcucggGUACAGGCUGGCaaaGUCcaGCa -3' miRNA: 3'- gCUGCUA------CAUGUCCGGCCG---CAGcaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 96668 | 0.66 | 0.927049 |
Target: 5'- gGGCGAcGUccucgggGCAGG-CGGCGUCGa-- -3' miRNA: 3'- gCUGCUaCA-------UGUCCgGCCGCAGCaug -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 99211 | 0.66 | 0.924357 |
Target: 5'- gGAgGcgGUGCAGGCCaGCGccucgccgcugcaggUCGUGg -3' miRNA: 3'- gCUgCuaCAUGUCCGGcCGC---------------AGCAUg -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 67728 | 0.66 | 0.92216 |
Target: 5'- aCGGCGcgGcgcACAGGCaCGGCG-CGgcgGCc -3' miRNA: 3'- -GCUGCuaCa--UGUCCG-GCCGCaGCa--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 36503 | 0.66 | 0.92216 |
Target: 5'- cCGGuCGGUGagccCGGGCCGGCGgcgCGg-- -3' miRNA: 3'- -GCU-GCUACau--GUCCGGCCGCa--GCaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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