Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29504 | 3' | -55 | NC_006151.1 | + | 68766 | 0.68 | 0.86284 |
Target: 5'- cCGGCGGUG-GCGcGCgCGGCGagGUGCg -3' miRNA: 3'- -GCUGCUACaUGUcCG-GCCGCagCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 69840 | 0.69 | 0.838322 |
Target: 5'- -aGCGc-GUGCGGGCCGGCaggacucGUCGUAg -3' miRNA: 3'- gcUGCuaCAUGUCCGGCCG-------CAGCAUg -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 52033 | 0.69 | 0.830856 |
Target: 5'- uCGGCGA-----AGGCCGGCGccgucgCGUGCg -3' miRNA: 3'- -GCUGCUacaugUCCGGCCGCa-----GCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 8238 | 0.69 | 0.830856 |
Target: 5'- cCGGCGGggagGgcCGGGCCGGCG-CGccgggACg -3' miRNA: 3'- -GCUGCUa---CauGUCCGGCCGCaGCa----UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 91750 | 0.69 | 0.830856 |
Target: 5'- gGGCGAgcgGgcuCGGGCgGGCGgUGUGCg -3' miRNA: 3'- gCUGCUa--Cau-GUCCGgCCGCaGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 103793 | 0.69 | 0.804939 |
Target: 5'- uGGCGgcGcUGCAGGCCGcGCuGUCGgcgGCc -3' miRNA: 3'- gCUGCuaC-AUGUCCGGC-CG-CAGCa--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 33123 | 0.7 | 0.777609 |
Target: 5'- gGGCGcGUGccGCGGGCCGaGUGUCGgGCg -3' miRNA: 3'- gCUGC-UACa-UGUCCGGC-CGCAGCaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 99359 | 0.7 | 0.777609 |
Target: 5'- aCGGCGGUcGU-C-GG-CGGCGUCGUGCa -3' miRNA: 3'- -GCUGCUA-CAuGuCCgGCCGCAGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 58498 | 0.7 | 0.749104 |
Target: 5'- gGAUGAUGcccgcgcGCGGGCCGGCcUCGUc- -3' miRNA: 3'- gCUGCUACa------UGUCCGGCCGcAGCAug -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 22633 | 0.7 | 0.749104 |
Target: 5'- aCGACGAc---CAGGCCGGCGagGgcgACg -3' miRNA: 3'- -GCUGCUacauGUCCGGCCGCagCa--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 23884 | 0.71 | 0.729569 |
Target: 5'- gGGCGAgcggGUucACGGGCUgGGCGUCGgucGCg -3' miRNA: 3'- gCUGCUa---CA--UGUCCGG-CCGCAGCa--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 89851 | 0.71 | 0.71967 |
Target: 5'- gCGugGGUGUGCGGGaCGGuCGccUCGUAg -3' miRNA: 3'- -GCugCUACAUGUCCgGCC-GC--AGCAUg -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 11689 | 0.71 | 0.709696 |
Target: 5'- cCGACGggGccGCGGGaCGGCG-CGUGCg -3' miRNA: 3'- -GCUGCuaCa-UGUCCgGCCGCaGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 8583 | 0.71 | 0.709696 |
Target: 5'- gGugGGUGUGaGGGCCGGUGcgaGUAUg -3' miRNA: 3'- gCugCUACAUgUCCGGCCGCag-CAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 39345 | 0.72 | 0.679413 |
Target: 5'- uCGGCGcgGcGCGGcGCCGGCucaUCGUGCu -3' miRNA: 3'- -GCUGCuaCaUGUC-CGGCCGc--AGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 98671 | 0.72 | 0.679413 |
Target: 5'- cCGACGAcGUcCuGGCCGcgccccGCGUCGUGCc -3' miRNA: 3'- -GCUGCUaCAuGuCCGGC------CGCAGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 117175 | 0.72 | 0.668208 |
Target: 5'- aGACGcgGUAgaaGGGCCgccggggGGCGUCGUAg -3' miRNA: 3'- gCUGCuaCAUg--UCCGG-------CCGCAGCAUg -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 104583 | 0.72 | 0.659014 |
Target: 5'- gGACG-UGcUGCAGGCCGGCGgcagcCGcgGCg -3' miRNA: 3'- gCUGCuAC-AUGUCCGGCCGCa----GCa-UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 26852 | 0.73 | 0.587363 |
Target: 5'- gCGACGGUGgugucCGaGCCGGCGUCGUc- -3' miRNA: 3'- -GCUGCUACau---GUcCGGCCGCAGCAug -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 18693 | 0.74 | 0.577198 |
Target: 5'- gGGCGcgcggGCGGcGCCGGCGUCGUGa -3' miRNA: 3'- gCUGCuaca-UGUC-CGGCCGCAGCAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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