miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 3' -55 NC_006151.1 + 2894 0.66 0.9377
Target:  5'- uCGAUGGUGUcCAGcacgaugaGCCGGCGcCGcGCc -3'
miRNA:   3'- -GCUGCUACAuGUC--------CGGCCGCaGCaUG- -5'
29504 3' -55 NC_006151.1 + 3117 0.65 0.946866
Target:  5'- gCGGCGcgGguccCAGGCCGgGCG-CGggGCg -3'
miRNA:   3'- -GCUGCuaCau--GUCCGGC-CGCaGCa-UG- -5'
29504 3' -55 NC_006151.1 + 3277 0.74 0.555989
Target:  5'- gCGGCGAUGUGCGccagggcGGCCGG-GUCGa-- -3'
miRNA:   3'- -GCUGCUACAUGU-------CCGGCCgCAGCaug -5'
29504 3' -55 NC_006151.1 + 3726 0.66 0.9377
Target:  5'- gGGCGcuggGUcCGGGCCGGCGgCGg-- -3'
miRNA:   3'- gCUGCua--CAuGUCCGGCCGCaGCaug -5'
29504 3' -55 NC_006151.1 + 5110 0.67 0.910602
Target:  5'- aGACGGUG-GCGGcCCGGCG-CGgGCg -3'
miRNA:   3'- gCUGCUACaUGUCcGGCCGCaGCaUG- -5'
29504 3' -55 NC_006151.1 + 8238 0.69 0.830856
Target:  5'- cCGGCGGggagGgcCGGGCCGGCG-CGccgggACg -3'
miRNA:   3'- -GCUGCUa---CauGUCCGGCCGCaGCa----UG- -5'
29504 3' -55 NC_006151.1 + 8583 0.71 0.709696
Target:  5'- gGugGGUGUGaGGGCCGGUGcgaGUAUg -3'
miRNA:   3'- gCugCUACAUgUCCGGCCGCag-CAUG- -5'
29504 3' -55 NC_006151.1 + 11689 0.71 0.709696
Target:  5'- cCGACGggGccGCGGGaCGGCG-CGUGCg -3'
miRNA:   3'- -GCUGCuaCa-UGUCCgGCCGCaGCAUG- -5'
29504 3' -55 NC_006151.1 + 18693 0.74 0.577198
Target:  5'- gGGCGcgcggGCGGcGCCGGCGUCGUGa -3'
miRNA:   3'- gCUGCuaca-UGUC-CGGCCGCAGCAUg -5'
29504 3' -55 NC_006151.1 + 19356 0.66 0.93276
Target:  5'- aGGCGucgugcagcGUGUAgAGGCCcGUGUCGUuggGCg -3'
miRNA:   3'- gCUGC---------UACAUgUCCGGcCGCAGCA---UG- -5'
29504 3' -55 NC_006151.1 + 20585 0.66 0.9377
Target:  5'- cCGACGA----CGGGCCGGCacUCGUccGCg -3'
miRNA:   3'- -GCUGCUacauGUCCGGCCGc-AGCA--UG- -5'
29504 3' -55 NC_006151.1 + 22061 0.66 0.9377
Target:  5'- gCGAUGcgGUAcCAGGCCacgugGGCG-CgGUACg -3'
miRNA:   3'- -GCUGCuaCAU-GUCCGG-----CCGCaG-CAUG- -5'
29504 3' -55 NC_006151.1 + 22633 0.7 0.749104
Target:  5'- aCGACGAc---CAGGCCGGCGagGgcgACg -3'
miRNA:   3'- -GCUGCUacauGUCCGGCCGCagCa--UG- -5'
29504 3' -55 NC_006151.1 + 23527 0.67 0.891493
Target:  5'- aGACGGUGccgAGGuaGGCGUCGUcGCc -3'
miRNA:   3'- gCUGCUACaugUCCggCCGCAGCA-UG- -5'
29504 3' -55 NC_006151.1 + 23565 1.11 0.002757
Target:  5'- aCGACGAUGUACAGGCCGGCGUCGUACa -3'
miRNA:   3'- -GCUGCUACAUGUCCGGCCGCAGCAUG- -5'
29504 3' -55 NC_006151.1 + 23884 0.71 0.729569
Target:  5'- gGGCGAgcggGUucACGGGCUgGGCGUCGgucGCg -3'
miRNA:   3'- gCUGCUa---CA--UGUCCGG-CCGCAGCa--UG- -5'
29504 3' -55 NC_006151.1 + 25060 0.66 0.939609
Target:  5'- uGAUGuccgaGUACAGGaucucgucggggauuCCGGCGUCGgcCa -3'
miRNA:   3'- gCUGCua---CAUGUCC---------------GGCCGCAGCauG- -5'
29504 3' -55 NC_006151.1 + 26352 0.68 0.87033
Target:  5'- gGGCGGcg-GCGGGCCG-CGUCGggGCg -3'
miRNA:   3'- gCUGCUacaUGUCCGGCcGCAGCa-UG- -5'
29504 3' -55 NC_006151.1 + 26852 0.73 0.587363
Target:  5'- gCGACGGUGgugucCGaGCCGGCGUCGUc- -3'
miRNA:   3'- -GCUGCUACau---GUcCGGCCGCAGCAug -5'
29504 3' -55 NC_006151.1 + 33123 0.7 0.777609
Target:  5'- gGGCGcGUGccGCGGGCCGaGUGUCGgGCg -3'
miRNA:   3'- gCUGC-UACa-UGUCCGGC-CGCAGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.