miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 3' -55 NC_006151.1 + 36503 0.66 0.92216
Target:  5'- cCGGuCGGUGagccCGGGCCGGCGgcgCGg-- -3'
miRNA:   3'- -GCU-GCUACau--GUCCGGCCGCa--GCaug -5'
29504 3' -55 NC_006151.1 + 39345 0.72 0.679413
Target:  5'- uCGGCGcgGcGCGGcGCCGGCucaUCGUGCu -3'
miRNA:   3'- -GCUGCuaCaUGUC-CGGCCGc--AGCAUG- -5'
29504 3' -55 NC_006151.1 + 44889 0.68 0.884662
Target:  5'- uCGGCGGUGUGCGG--UGGUGUgUGUGCg -3'
miRNA:   3'- -GCUGCUACAUGUCcgGCCGCA-GCAUG- -5'
29504 3' -55 NC_006151.1 + 51750 0.67 0.891493
Target:  5'- aGACGcUGUucaugcGCAGGuuGGCGcgCGUGa -3'
miRNA:   3'- gCUGCuACA------UGUCCggCCGCa-GCAUg -5'
29504 3' -55 NC_006151.1 + 52033 0.69 0.830856
Target:  5'- uCGGCGA-----AGGCCGGCGccgucgCGUGCg -3'
miRNA:   3'- -GCUGCUacaugUCCGGCCGCa-----GCAUG- -5'
29504 3' -55 NC_006151.1 + 52808 0.67 0.910602
Target:  5'- aGuuGGUGaUGC-GGCCGGCGUUGgccGCg -3'
miRNA:   3'- gCugCUAC-AUGuCCGGCCGCAGCa--UG- -5'
29504 3' -55 NC_006151.1 + 55061 0.66 0.932252
Target:  5'- uCGGCGAggacccgGCGGGCucggccgCGGCGcgccUCGUGCg -3'
miRNA:   3'- -GCUGCUaca----UGUCCG-------GCCGC----AGCAUG- -5'
29504 3' -55 NC_006151.1 + 58498 0.7 0.749104
Target:  5'- gGAUGAUGcccgcgcGCGGGCCGGCcUCGUc- -3'
miRNA:   3'- gCUGCUACa------UGUCCGGCCGcAGCAug -5'
29504 3' -55 NC_006151.1 + 59151 0.81 0.240065
Target:  5'- gGGCGG-GUcCAGGCCGGCGUCGcGCa -3'
miRNA:   3'- gCUGCUaCAuGUCCGGCCGCAGCaUG- -5'
29504 3' -55 NC_006151.1 + 61263 0.68 0.877606
Target:  5'- gGACGcgGcgGCAGG-CGGUaUCGUGCg -3'
miRNA:   3'- gCUGCuaCa-UGUCCgGCCGcAGCAUG- -5'
29504 3' -55 NC_006151.1 + 67728 0.66 0.92216
Target:  5'- aCGGCGcgGcgcACAGGCaCGGCG-CGgcgGCc -3'
miRNA:   3'- -GCUGCuaCa--UGUCCG-GCCGCaGCa--UG- -5'
29504 3' -55 NC_006151.1 + 68065 0.68 0.87033
Target:  5'- uCGGCGAcGgGCAGGUCGGCGg---GCa -3'
miRNA:   3'- -GCUGCUaCaUGUCCGGCCGCagcaUG- -5'
29504 3' -55 NC_006151.1 + 68766 0.68 0.86284
Target:  5'- cCGGCGGUG-GCGcGCgCGGCGagGUGCg -3'
miRNA:   3'- -GCUGCUACaUGUcCG-GCCGCagCAUG- -5'
29504 3' -55 NC_006151.1 + 69840 0.69 0.838322
Target:  5'- -aGCGc-GUGCGGGCCGGCaggacucGUCGUAg -3'
miRNA:   3'- gcUGCuaCAUGUCCGGCCG-------CAGCAUg -5'
29504 3' -55 NC_006151.1 + 73995 0.67 0.9165
Target:  5'- cCGGCGccaccgAGGCCaggaggGGCGUCGUGCg -3'
miRNA:   3'- -GCUGCuacaugUCCGG------CCGCAGCAUG- -5'
29504 3' -55 NC_006151.1 + 83602 0.68 0.884662
Target:  5'- aGGCGcGUGUgcagcaGCAGGUaCGGCGUCGcgaagGCg -3'
miRNA:   3'- gCUGC-UACA------UGUCCG-GCCGCAGCa----UG- -5'
29504 3' -55 NC_006151.1 + 88878 0.67 0.91299
Target:  5'- gGGCGcgGggGCucgucaaaguacucgGGGUCGGCGUCGgGCg -3'
miRNA:   3'- gCUGCuaCa-UG---------------UCCGGCCGCAGCaUG- -5'
29504 3' -55 NC_006151.1 + 89444 0.66 0.941942
Target:  5'- gCGACGGUcacGUACgccugcaccagcaGGGCCcGCGUcaCGUGCg -3'
miRNA:   3'- -GCUGCUA---CAUG-------------UCCGGcCGCA--GCAUG- -5'
29504 3' -55 NC_006151.1 + 89851 0.71 0.71967
Target:  5'- gCGugGGUGUGCGGGaCGGuCGccUCGUAg -3'
miRNA:   3'- -GCugCUACAUGUCCgGCC-GC--AGCAUg -5'
29504 3' -55 NC_006151.1 + 89896 0.68 0.884662
Target:  5'- uCGGCGGUG---GGGUCGGCGUCc-GCg -3'
miRNA:   3'- -GCUGCUACaugUCCGGCCGCAGcaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.