miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 3' -55 NC_006151.1 + 141412 0.68 0.87033
Target:  5'- cCGGCGAUcgGUGCGGGCgcggccCGGCG-CGaACg -3'
miRNA:   3'- -GCUGCUA--CAUGUCCG------GCCGCaGCaUG- -5'
29504 3' -55 NC_006151.1 + 130254 0.67 0.910602
Target:  5'- aGGCGcgGaAgAGGCCGGCG-CGcgGCc -3'
miRNA:   3'- gCUGCuaCaUgUCCGGCCGCaGCa-UG- -5'
29504 3' -55 NC_006151.1 + 127707 0.68 0.884662
Target:  5'- gCGACGAgcucGUGgAGGCCccGGCGUCc--- -3'
miRNA:   3'- -GCUGCUa---CAUgUCCGG--CCGCAGcaug -5'
29504 3' -55 NC_006151.1 + 127287 0.65 0.945108
Target:  5'- uGACGGgucgggggugcugGUACAGGCCGuCGUcCGcGCg -3'
miRNA:   3'- gCUGCUa------------CAUGUCCGGCcGCA-GCaUG- -5'
29504 3' -55 NC_006151.1 + 125540 0.68 0.884662
Target:  5'- gCGugGAgGUGCGcGG-CGGCGUguaCGUGCa -3'
miRNA:   3'- -GCugCUaCAUGU-CCgGCCGCA---GCAUG- -5'
29504 3' -55 NC_006151.1 + 118559 0.65 0.946866
Target:  5'- -cACGGUGUccaucaACGGGCacgaGGCGUggcgCGUGCc -3'
miRNA:   3'- gcUGCUACA------UGUCCGg---CCGCA----GCAUG- -5'
29504 3' -55 NC_006151.1 + 117175 0.72 0.668208
Target:  5'- aGACGcgGUAgaaGGGCCgccggggGGCGUCGUAg -3'
miRNA:   3'- gCUGCuaCAUg--UCCGG-------CCGCAGCAUg -5'
29504 3' -55 NC_006151.1 + 115994 0.66 0.92758
Target:  5'- gGAUGAUgcucggGUACAGGCUGGCaaaGUCcaGCa -3'
miRNA:   3'- gCUGCUA------CAUGUCCGGCCG---CAGcaUG- -5'
29504 3' -55 NC_006151.1 + 115092 0.67 0.910602
Target:  5'- uGACGAagucggccacGUcCAGGCCGGCGcCGccgGCg -3'
miRNA:   3'- gCUGCUa---------CAuGUCCGGCCGCaGCa--UG- -5'
29504 3' -55 NC_006151.1 + 113698 0.68 0.877606
Target:  5'- gGGCGcGUGUGCGGGgagcuguggaccCUGGCGUaCGUAUu -3'
miRNA:   3'- gCUGC-UACAUGUCC------------GGCCGCA-GCAUG- -5'
29504 3' -55 NC_006151.1 + 112031 0.66 0.93276
Target:  5'- cCGGCGGga-GCugGGGCCGGCGggCGgGCg -3'
miRNA:   3'- -GCUGCUacaUG--UCCGGCCGCa-GCaUG- -5'
29504 3' -55 NC_006151.1 + 111282 0.66 0.941016
Target:  5'- gGGCGGgggGUACGcGGCCuggcccacgaacgcGGCGgccgCGUGCc -3'
miRNA:   3'- gCUGCUa--CAUGU-CCGG--------------CCGCa---GCAUG- -5'
29504 3' -55 NC_006151.1 + 107035 0.67 0.898096
Target:  5'- gCGGCGcgGcccCuGGCCGGCGagccggccugccUCGUGCu -3'
miRNA:   3'- -GCUGCuaCau-GuCCGGCCGC------------AGCAUG- -5'
29504 3' -55 NC_006151.1 + 104583 0.72 0.659014
Target:  5'- gGACG-UGcUGCAGGCCGGCGgcagcCGcgGCg -3'
miRNA:   3'- gCUGCuAC-AUGUCCGGCCGCa----GCa-UG- -5'
29504 3' -55 NC_006151.1 + 103793 0.69 0.804939
Target:  5'- uGGCGgcGcUGCAGGCCGcGCuGUCGgcgGCc -3'
miRNA:   3'- gCUGCuaC-AUGUCCGGC-CG-CAGCa--UG- -5'
29504 3' -55 NC_006151.1 + 103629 0.66 0.942401
Target:  5'- cCGACGcgGUggcgGCGGcGCUGGCGgacgCGgACa -3'
miRNA:   3'- -GCUGCuaCA----UGUC-CGGCCGCa---GCaUG- -5'
29504 3' -55 NC_006151.1 + 99359 0.7 0.777609
Target:  5'- aCGGCGGUcGU-C-GG-CGGCGUCGUGCa -3'
miRNA:   3'- -GCUGCUA-CAuGuCCgGCCGCAGCAUG- -5'
29504 3' -55 NC_006151.1 + 99211 0.66 0.924357
Target:  5'- gGAgGcgGUGCAGGCCaGCGccucgccgcugcaggUCGUGg -3'
miRNA:   3'- gCUgCuaCAUGUCCGGcCGC---------------AGCAUg -5'
29504 3' -55 NC_006151.1 + 98671 0.72 0.679413
Target:  5'- cCGACGAcGUcCuGGCCGcgccccGCGUCGUGCc -3'
miRNA:   3'- -GCUGCUaCAuGuCCGGC------CGCAGCAUG- -5'
29504 3' -55 NC_006151.1 + 97365 0.66 0.942401
Target:  5'- gCGGCGGcg-GCGGGCgCGGCGggggCGUcgGCc -3'
miRNA:   3'- -GCUGCUacaUGUCCG-GCCGCa---GCA--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.