Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29504 | 3' | -55 | NC_006151.1 | + | 96668 | 0.66 | 0.927049 |
Target: 5'- gGGCGAcGUccucgggGCAGG-CGGCGUCGa-- -3' miRNA: 3'- gCUGCUaCA-------UGUCCgGCCGCAGCaug -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 91750 | 0.69 | 0.830856 |
Target: 5'- gGGCGAgcgGgcuCGGGCgGGCGgUGUGCg -3' miRNA: 3'- gCUGCUa--Cau-GUCCGgCCGCaGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 90125 | 0.68 | 0.877606 |
Target: 5'- uGACGAg--GCAGGCgGgGCGguaGUGCg -3' miRNA: 3'- gCUGCUacaUGUCCGgC-CGCag-CAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 89896 | 0.68 | 0.884662 |
Target: 5'- uCGGCGGUG---GGGUCGGCGUCc-GCg -3' miRNA: 3'- -GCUGCUACaugUCCGGCCGCAGcaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 89851 | 0.71 | 0.71967 |
Target: 5'- gCGugGGUGUGCGGGaCGGuCGccUCGUAg -3' miRNA: 3'- -GCugCUACAUGUCCgGCC-GC--AGCAUg -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 89444 | 0.66 | 0.941942 |
Target: 5'- gCGACGGUcacGUACgccugcaccagcaGGGCCcGCGUcaCGUGCg -3' miRNA: 3'- -GCUGCUA---CAUG-------------UCCGGcCGCA--GCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 88878 | 0.67 | 0.91299 |
Target: 5'- gGGCGcgGggGCucgucaaaguacucgGGGUCGGCGUCGgGCg -3' miRNA: 3'- gCUGCuaCa-UG---------------UCCGGCCGCAGCaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 83602 | 0.68 | 0.884662 |
Target: 5'- aGGCGcGUGUgcagcaGCAGGUaCGGCGUCGcgaagGCg -3' miRNA: 3'- gCUGC-UACA------UGUCCG-GCCGCAGCa----UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 73995 | 0.67 | 0.9165 |
Target: 5'- cCGGCGccaccgAGGCCaggaggGGCGUCGUGCg -3' miRNA: 3'- -GCUGCuacaugUCCGG------CCGCAGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 69840 | 0.69 | 0.838322 |
Target: 5'- -aGCGc-GUGCGGGCCGGCaggacucGUCGUAg -3' miRNA: 3'- gcUGCuaCAUGUCCGGCCG-------CAGCAUg -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 68766 | 0.68 | 0.86284 |
Target: 5'- cCGGCGGUG-GCGcGCgCGGCGagGUGCg -3' miRNA: 3'- -GCUGCUACaUGUcCG-GCCGCagCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 68065 | 0.68 | 0.87033 |
Target: 5'- uCGGCGAcGgGCAGGUCGGCGg---GCa -3' miRNA: 3'- -GCUGCUaCaUGUCCGGCCGCagcaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 67728 | 0.66 | 0.92216 |
Target: 5'- aCGGCGcgGcgcACAGGCaCGGCG-CGgcgGCc -3' miRNA: 3'- -GCUGCuaCa--UGUCCG-GCCGCaGCa--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 61263 | 0.68 | 0.877606 |
Target: 5'- gGACGcgGcgGCAGG-CGGUaUCGUGCg -3' miRNA: 3'- gCUGCuaCa-UGUCCgGCCGcAGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 59151 | 0.81 | 0.240065 |
Target: 5'- gGGCGG-GUcCAGGCCGGCGUCGcGCa -3' miRNA: 3'- gCUGCUaCAuGUCCGGCCGCAGCaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 58498 | 0.7 | 0.749104 |
Target: 5'- gGAUGAUGcccgcgcGCGGGCCGGCcUCGUc- -3' miRNA: 3'- gCUGCUACa------UGUCCGGCCGcAGCAug -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 55061 | 0.66 | 0.932252 |
Target: 5'- uCGGCGAggacccgGCGGGCucggccgCGGCGcgccUCGUGCg -3' miRNA: 3'- -GCUGCUaca----UGUCCG-------GCCGC----AGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 52808 | 0.67 | 0.910602 |
Target: 5'- aGuuGGUGaUGC-GGCCGGCGUUGgccGCg -3' miRNA: 3'- gCugCUAC-AUGuCCGGCCGCAGCa--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 52033 | 0.69 | 0.830856 |
Target: 5'- uCGGCGA-----AGGCCGGCGccgucgCGUGCg -3' miRNA: 3'- -GCUGCUacaugUCCGGCCGCa-----GCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 51750 | 0.67 | 0.891493 |
Target: 5'- aGACGcUGUucaugcGCAGGuuGGCGcgCGUGa -3' miRNA: 3'- gCUGCuACA------UGUCCggCCGCa-GCAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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