Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29504 | 3' | -55 | NC_006151.1 | + | 44889 | 0.68 | 0.884662 |
Target: 5'- uCGGCGGUGUGCGG--UGGUGUgUGUGCg -3' miRNA: 3'- -GCUGCUACAUGUCcgGCCGCA-GCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 39345 | 0.72 | 0.679413 |
Target: 5'- uCGGCGcgGcGCGGcGCCGGCucaUCGUGCu -3' miRNA: 3'- -GCUGCuaCaUGUC-CGGCCGc--AGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 36503 | 0.66 | 0.92216 |
Target: 5'- cCGGuCGGUGagccCGGGCCGGCGgcgCGg-- -3' miRNA: 3'- -GCU-GCUACau--GUCCGGCCGCa--GCaug -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 33123 | 0.7 | 0.777609 |
Target: 5'- gGGCGcGUGccGCGGGCCGaGUGUCGgGCg -3' miRNA: 3'- gCUGC-UACa-UGUCCGGC-CGCAGCaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 26852 | 0.73 | 0.587363 |
Target: 5'- gCGACGGUGgugucCGaGCCGGCGUCGUc- -3' miRNA: 3'- -GCUGCUACau---GUcCGGCCGCAGCAug -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 26352 | 0.68 | 0.87033 |
Target: 5'- gGGCGGcg-GCGGGCCG-CGUCGggGCg -3' miRNA: 3'- gCUGCUacaUGUCCGGCcGCAGCa-UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 25060 | 0.66 | 0.939609 |
Target: 5'- uGAUGuccgaGUACAGGaucucgucggggauuCCGGCGUCGgcCa -3' miRNA: 3'- gCUGCua---CAUGUCC---------------GGCCGCAGCauG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 23884 | 0.71 | 0.729569 |
Target: 5'- gGGCGAgcggGUucACGGGCUgGGCGUCGgucGCg -3' miRNA: 3'- gCUGCUa---CA--UGUCCGG-CCGCAGCa--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 23565 | 1.11 | 0.002757 |
Target: 5'- aCGACGAUGUACAGGCCGGCGUCGUACa -3' miRNA: 3'- -GCUGCUACAUGUCCGGCCGCAGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 23527 | 0.67 | 0.891493 |
Target: 5'- aGACGGUGccgAGGuaGGCGUCGUcGCc -3' miRNA: 3'- gCUGCUACaugUCCggCCGCAGCA-UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 22633 | 0.7 | 0.749104 |
Target: 5'- aCGACGAc---CAGGCCGGCGagGgcgACg -3' miRNA: 3'- -GCUGCUacauGUCCGGCCGCagCa--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 22061 | 0.66 | 0.9377 |
Target: 5'- gCGAUGcgGUAcCAGGCCacgugGGCG-CgGUACg -3' miRNA: 3'- -GCUGCuaCAU-GUCCGG-----CCGCaG-CAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 20585 | 0.66 | 0.9377 |
Target: 5'- cCGACGA----CGGGCCGGCacUCGUccGCg -3' miRNA: 3'- -GCUGCUacauGUCCGGCCGc-AGCA--UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 19356 | 0.66 | 0.93276 |
Target: 5'- aGGCGucgugcagcGUGUAgAGGCCcGUGUCGUuggGCg -3' miRNA: 3'- gCUGC---------UACAUgUCCGGcCGCAGCA---UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 18693 | 0.74 | 0.577198 |
Target: 5'- gGGCGcgcggGCGGcGCCGGCGUCGUGa -3' miRNA: 3'- gCUGCuaca-UGUC-CGGCCGCAGCAUg -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 11689 | 0.71 | 0.709696 |
Target: 5'- cCGACGggGccGCGGGaCGGCG-CGUGCg -3' miRNA: 3'- -GCUGCuaCa-UGUCCgGCCGCaGCAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 8583 | 0.71 | 0.709696 |
Target: 5'- gGugGGUGUGaGGGCCGGUGcgaGUAUg -3' miRNA: 3'- gCugCUACAUgUCCGGCCGCag-CAUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 8238 | 0.69 | 0.830856 |
Target: 5'- cCGGCGGggagGgcCGGGCCGGCG-CGccgggACg -3' miRNA: 3'- -GCUGCUa---CauGUCCGGCCGCaGCa----UG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 5110 | 0.67 | 0.910602 |
Target: 5'- aGACGGUG-GCGGcCCGGCG-CGgGCg -3' miRNA: 3'- gCUGCUACaUGUCcGGCCGCaGCaUG- -5' |
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29504 | 3' | -55 | NC_006151.1 | + | 3726 | 0.66 | 0.9377 |
Target: 5'- gGGCGcuggGUcCGGGCCGGCGgCGg-- -3' miRNA: 3'- gCUGCua--CAuGUCCGGCCGCaGCaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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