Results 41 - 60 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29504 | 3' | -55 | NC_006151.1 | + | 89444 | 0.66 | 0.941942 |
Target: 5'- gCGACGGUcacGUACgccugcaccagcaGGGCCcGCGUcaCGUGCg -3' miRNA: 3'- -GCUGCUA---CAUG-------------UCCGGcCGCA--GCAUG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 97365 | 0.66 | 0.942401 |
Target: 5'- gCGGCGGcg-GCGGGCgCGGCGggggCGUcgGCc -3' miRNA: 3'- -GCUGCUacaUGUCCG-GCCGCa---GCA--UG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 103629 | 0.66 | 0.942401 |
Target: 5'- cCGACGcgGUggcgGCGGcGCUGGCGgacgCGgACa -3' miRNA: 3'- -GCUGCuaCA----UGUC-CGGCCGCa---GCaUG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 127287 | 0.65 | 0.945108 |
Target: 5'- uGACGGgucgggggugcugGUACAGGCCGuCGUcCGcGCg -3' miRNA: 3'- gCUGCUa------------CAUGUCCGGCcGCA-GCaUG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 3117 | 0.65 | 0.946866 |
Target: 5'- gCGGCGcgGguccCAGGCCGgGCG-CGggGCg -3' miRNA: 3'- -GCUGCuaCau--GUCCGGC-CGCaGCa-UG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 55061 | 0.66 | 0.932252 |
Target: 5'- uCGGCGAggacccgGCGGGCucggccgCGGCGcgccUCGUGCg -3' miRNA: 3'- -GCUGCUaca----UGUCCG-------GCCGC----AGCAUG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 115994 | 0.66 | 0.92758 |
Target: 5'- gGAUGAUgcucggGUACAGGCUGGCaaaGUCcaGCa -3' miRNA: 3'- gCUGCUA------CAUGUCCGGCCG---CAGcaUG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 23527 | 0.67 | 0.891493 |
Target: 5'- aGACGGUGccgAGGuaGGCGUCGUcGCc -3' miRNA: 3'- gCUGCUACaugUCCggCCGCAGCA-UG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 51750 | 0.67 | 0.891493 |
Target: 5'- aGACGcUGUucaugcGCAGGuuGGCGcgCGUGa -3' miRNA: 3'- gCUGCuACA------UGUCCggCCGCa-GCAUg -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 107035 | 0.67 | 0.898096 |
Target: 5'- gCGGCGcgGcccCuGGCCGGCGagccggccugccUCGUGCu -3' miRNA: 3'- -GCUGCuaCau-GuCCGGCCGC------------AGCAUG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 52808 | 0.67 | 0.910602 |
Target: 5'- aGuuGGUGaUGC-GGCCGGCGUUGgccGCg -3' miRNA: 3'- gCugCUAC-AUGuCCGGCCGCAGCa--UG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 5110 | 0.67 | 0.910602 |
Target: 5'- aGACGGUG-GCGGcCCGGCG-CGgGCg -3' miRNA: 3'- gCUGCUACaUGUCcGGCCGCaGCaUG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 115092 | 0.67 | 0.910602 |
Target: 5'- uGACGAagucggccacGUcCAGGCCGGCGcCGccgGCg -3' miRNA: 3'- gCUGCUa---------CAuGUCCGGCCGCaGCa--UG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 130254 | 0.67 | 0.910602 |
Target: 5'- aGGCGcgGaAgAGGCCGGCG-CGcgGCc -3' miRNA: 3'- gCUGCuaCaUgUCCGGCCGCaGCa-UG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 88878 | 0.67 | 0.91299 |
Target: 5'- gGGCGcgGggGCucgucaaaguacucgGGGUCGGCGUCGgGCg -3' miRNA: 3'- gCUGCuaCa-UG---------------UCCGGCCGCAGCaUG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 73995 | 0.67 | 0.9165 |
Target: 5'- cCGGCGccaccgAGGCCaggaggGGCGUCGUGCg -3' miRNA: 3'- -GCUGCuacaugUCCGG------CCGCAGCAUG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 36503 | 0.66 | 0.92216 |
Target: 5'- cCGGuCGGUGagccCGGGCCGGCGgcgCGg-- -3' miRNA: 3'- -GCU-GCUACau--GUCCGGCCGCa--GCaug -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 67728 | 0.66 | 0.92216 |
Target: 5'- aCGGCGcgGcgcACAGGCaCGGCG-CGgcgGCc -3' miRNA: 3'- -GCUGCuaCa--UGUCCG-GCCGCaGCa--UG- -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 99211 | 0.66 | 0.924357 |
Target: 5'- gGAgGcgGUGCAGGCCaGCGccucgccgcugcaggUCGUGg -3' miRNA: 3'- gCUgCuaCAUGUCCGGcCGC---------------AGCAUg -5' |
|||||||
29504 | 3' | -55 | NC_006151.1 | + | 96668 | 0.66 | 0.927049 |
Target: 5'- gGGCGAcGUccucgggGCAGG-CGGCGUCGa-- -3' miRNA: 3'- gCUGCUaCA-------UGUCCgGCCGCAGCaug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home