miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 142430 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142404 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142378 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 133395 0.66 0.861454
Target:  5'- gCGGC-CGGGGCcgagcgGGCGgucuuggccgcggaCGCGGGGGu -3'
miRNA:   3'- -GUCGuGCUCCGa-----CCGCaa------------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 59342 0.66 0.860699
Target:  5'- cCAGCGCGcucaGGGCc-GCGcgCACGGGGc -3'
miRNA:   3'- -GUCGUGC----UCCGacCGCaaGUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 106668 0.66 0.860699
Target:  5'- -uGCGCGAGGCcgcGGCGcucggCGCGccGGGc -3'
miRNA:   3'- guCGUGCUCCGa--CCGCaa---GUGCu-CCC- -5'
29504 5' -57.3 NC_006151.1 + 70090 0.66 0.860699
Target:  5'- -uGCGCGuGGGC-GGCGaagggCGCGAGcGGg -3'
miRNA:   3'- guCGUGC-UCCGaCCGCaa---GUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 3356 0.67 0.820459
Target:  5'- gGGCGCG-GGCcaccucgGGCGggCaguaggcgGCGAGGGc -3'
miRNA:   3'- gUCGUGCuCCGa------CCGCaaG--------UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 33152 0.67 0.820459
Target:  5'- gAGUGCGAGGCgGGuCGgggGCGGGGa -3'
miRNA:   3'- gUCGUGCUCCGaCC-GCaagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 130522 0.67 0.811877
Target:  5'- gGGCGCG-GGCgucGCGUacacgcccccgCGCGAGGGc -3'
miRNA:   3'- gUCGUGCuCCGac-CGCAa----------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 5360 0.67 0.811877
Target:  5'- cCGGCGCGGcGCcGGCGgggcugUCucuGCGGGGGc -3'
miRNA:   3'- -GUCGUGCUcCGaCCGCa-----AG---UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 125632 0.67 0.811877
Target:  5'- gAGCACaacGGCacgGGCGUgauCGAGGGc -3'
miRNA:   3'- gUCGUGcu-CCGa--CCGCAaguGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 27458 0.67 0.820459
Target:  5'- uGGguCgGGGGCgGGCGgucgaGCGGGGGg -3'
miRNA:   3'- gUCguG-CUCCGaCCGCaag--UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 72749 0.67 0.820459
Target:  5'- gCAGCGCcGAGucGCUGGCGcacaGCGGcGGGu -3'
miRNA:   3'- -GUCGUG-CUC--CGACCGCaag-UGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 81224 0.67 0.820459
Target:  5'- cCGGCGCGuGaacacgaaGCUGGCGccccCGCGcAGGGg -3'
miRNA:   3'- -GUCGUGCuC--------CGACCGCaa--GUGC-UCCC- -5'
29504 5' -57.3 NC_006151.1 + 5243 0.67 0.820459
Target:  5'- -cGCGCGGcGGC-GGCGggggCcCGGGGGg -3'
miRNA:   3'- guCGUGCU-CCGaCCGCaa--GuGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 30329 0.67 0.820459
Target:  5'- aAGaugAgGAGGC-GGCGgcggCGCGAGGGc -3'
miRNA:   3'- gUCg--UgCUCCGaCCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 41468 0.67 0.828872
Target:  5'- cCGGCgggacgaugACGAcGGCgaccGCGUggCGCGAGGGg -3'
miRNA:   3'- -GUCG---------UGCU-CCGac--CGCAa-GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 67864 0.67 0.828872
Target:  5'- cCGGCGCcGAGG-UGGCGcgCGCGccagcccgcGGGGc -3'
miRNA:   3'- -GUCGUG-CUCCgACCGCaaGUGC---------UCCC- -5'
29504 5' -57.3 NC_006151.1 + 19058 0.67 0.811877
Target:  5'- gGGCGC-AGGCacucgGGCGcgCGCGGGuGGu -3'
miRNA:   3'- gUCGUGcUCCGa----CCGCaaGUGCUC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.