miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 82416 0.68 0.728455
Target:  5'- gCGGCcccgaGAGGCgcgGGCGcUCGCGcGGGc -3'
miRNA:   3'- -GUCGug---CUCCGa--CCGCaAGUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 49281 0.68 0.73817
Target:  5'- gCGGCucuGCGAGacccgccccaaGCUGGUGUUCAUGcucuGGGg -3'
miRNA:   3'- -GUCG---UGCUC-----------CGACCGCAAGUGCu---CCC- -5'
29504 5' -57.3 NC_006151.1 + 88379 0.68 0.73817
Target:  5'- uCGGCGCGAGcGCguccgcGGCGUccgcggcCGCGAGGc -3'
miRNA:   3'- -GUCGUGCUC-CGa-----CCGCAa------GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 141749 0.68 0.747794
Target:  5'- gGGCGCGGGGCgcgcgccccggUGGCGUcgccgguucugUCcCGGGGa -3'
miRNA:   3'- gUCGUGCUCCG-----------ACCGCA-----------AGuGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 29609 0.68 0.776033
Target:  5'- gCGGCG-GGGGCUGGUGUgggaggagUGGGGGa -3'
miRNA:   3'- -GUCGUgCUCCGACCGCAagu-----GCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 90744 0.68 0.766735
Target:  5'- gCGGCGCccucgGGGGC-GGCGggCACGGuggcGGGg -3'
miRNA:   3'- -GUCGUG-----CUCCGaCCGCaaGUGCU----CCC- -5'
29504 5' -57.3 NC_006151.1 + 22868 0.68 0.766735
Target:  5'- gCAGgGCGGGGCUgccGGUGggggUCACGAagaugucagaGGGc -3'
miRNA:   3'- -GUCgUGCUCCGA---CCGCa---AGUGCU----------CCC- -5'
29504 5' -57.3 NC_006151.1 + 121411 0.68 0.757319
Target:  5'- gCGGCGCG-GGCggGGaCG-UCGCGGGGc -3'
miRNA:   3'- -GUCGUGCuCCGa-CC-GCaAGUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 70919 0.68 0.757319
Target:  5'- uGGCGCGcGuGCUGGCGcugCACGAcGGc -3'
miRNA:   3'- gUCGUGCuC-CGACCGCaa-GUGCUcCC- -5'
29504 5' -57.3 NC_006151.1 + 71950 0.68 0.756371
Target:  5'- gAGCGCGuGGCcgccucGGCGUugUCGCGgugcggcGGGGg -3'
miRNA:   3'- gUCGUGCuCCGa-----CCGCA--AGUGC-------UCCC- -5'
29504 5' -57.3 NC_006151.1 + 84132 0.69 0.678834
Target:  5'- aAGCGCG-GGCa-GCGg-CACGAGGGg -3'
miRNA:   3'- gUCGUGCuCCGacCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 57199 0.69 0.688868
Target:  5'- uGGCGCGAGGCgaaGGCccgcUCgACGAGGc -3'
miRNA:   3'- gUCGUGCUCCGa--CCGca--AG-UGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 99608 0.69 0.694867
Target:  5'- -cGCGCcGGGCUGGCGcacagcgccgcgCGCGAGGc -3'
miRNA:   3'- guCGUGcUCCGACCGCaa----------GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 88613 0.69 0.695865
Target:  5'- gCGGCGCGcucaggccgaacucGGGCUGGCuGUaCAgGAGGa -3'
miRNA:   3'- -GUCGUGC--------------UCCGACCG-CAaGUgCUCCc -5'
29504 5' -57.3 NC_006151.1 + 75722 0.69 0.698856
Target:  5'- cCAGCgccgucACGAGGUUGGUGUUgGCGAu-- -3'
miRNA:   3'- -GUCG------UGCUCCGACCGCAAgUGCUccc -5'
29504 5' -57.3 NC_006151.1 + 110867 0.69 0.698856
Target:  5'- -cGCugGuggcgaacauGGGCUGGCGcucCACGAGGu -3'
miRNA:   3'- guCGugC----------UCCGACCGCaa-GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 128045 0.69 0.698856
Target:  5'- gCGGCAgCGGcGGCagcGGCGgcugCGCGGGGGc -3'
miRNA:   3'- -GUCGU-GCU-CCGa--CCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 132814 0.69 0.708789
Target:  5'- aCAGCGCGuccGGGCUGGCcgccCGCGGGa- -3'
miRNA:   3'- -GUCGUGC---UCCGACCGcaa-GUGCUCcc -5'
29504 5' -57.3 NC_006151.1 + 114901 0.69 0.714719
Target:  5'- gGGCGCGAGGCccgGGCGcacggccccggcgUCGCGcucggccuccGGGGu -3'
miRNA:   3'- gUCGUGCUCCGa--CCGCa------------AGUGC----------UCCC- -5'
29504 5' -57.3 NC_006151.1 + 134997 0.69 0.678834
Target:  5'- gGGCGCGuc-UUGGCGggggCGCGGGGGg -3'
miRNA:   3'- gUCGUGCuccGACCGCaa--GUGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.