miRNA display CGI


Results 81 - 100 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 49602 0.67 0.794242
Target:  5'- cCAGCGCGcugccGGUccUGGCGgugcugCGCGAGuGGg -3'
miRNA:   3'- -GUCGUGCu----CCG--ACCGCaa----GUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 97360 0.67 0.794242
Target:  5'- aGGcCGCGGcGGC-GGCGggCGCGGcGGGg -3'
miRNA:   3'- gUC-GUGCU-CCGaCCGCaaGUGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 99479 0.67 0.794242
Target:  5'- gCGGCGCuGGGGCUccccgagaagGGCGUggagCACGuGGu -3'
miRNA:   3'- -GUCGUG-CUCCGA----------CCGCAa---GUGCuCCc -5'
29504 5' -57.3 NC_006151.1 + 129762 0.67 0.794242
Target:  5'- cCAGCGCGaAGGCgacgagGGCGUcgcUCccgccgGCGuGGGc -3'
miRNA:   3'- -GUCGUGC-UCCGa-----CCGCA---AG------UGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 96863 0.67 0.794242
Target:  5'- -cGCGCccgccGGGCgcGGCGcgCGCGGGGGc -3'
miRNA:   3'- guCGUGc----UCCGa-CCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 101210 0.67 0.803136
Target:  5'- -uGCGCGAgGGCcaGGCGUggACGGGGc -3'
miRNA:   3'- guCGUGCU-CCGa-CCGCAagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 73020 0.67 0.803136
Target:  5'- -cGCuGCGAGGCccagggauUGGCGguggCGCGGuGGGg -3'
miRNA:   3'- guCG-UGCUCCG--------ACCGCaa--GUGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 10433 0.67 0.803136
Target:  5'- gGGC-CGAGGCcGGCGgg---GAGGGa -3'
miRNA:   3'- gUCGuGCUCCGaCCGCaagugCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 80036 0.67 0.803136
Target:  5'- gGGgACGGGGgaGGCGggagUCugGcuguGGGa -3'
miRNA:   3'- gUCgUGCUCCgaCCGCa---AGugCu---CCC- -5'
29504 5' -57.3 NC_006151.1 + 111330 0.67 0.797817
Target:  5'- gGGCACGggcgagaugacggucGGGCggaugGGCGcgCgggGCGAGGGc -3'
miRNA:   3'- gUCGUGC---------------UCCGa----CCGCaaG---UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142430 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142404 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 70090 0.66 0.860699
Target:  5'- -uGCGCGuGGGC-GGCGaagggCGCGAGcGGg -3'
miRNA:   3'- guCGUGC-UCCGaCCGCaa---GUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 130793 0.66 0.85303
Target:  5'- -cGCGCGuccaGCUGGCGUaCGCGGcguccGGGu -3'
miRNA:   3'- guCGUGCuc--CGACCGCAaGUGCU-----CCC- -5'
29504 5' -57.3 NC_006151.1 + 117297 0.66 0.85303
Target:  5'- -cGCGCGAGcuGCUcGGCGcUCGCcacgccGAGGGc -3'
miRNA:   3'- guCGUGCUC--CGA-CCGCaAGUG------CUCCC- -5'
29504 5' -57.3 NC_006151.1 + 60896 0.66 0.83711
Target:  5'- -cGCGCGAGcagGGCGUcCACGcGGGc -3'
miRNA:   3'- guCGUGCUCcgaCCGCAaGUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 125740 0.66 0.83711
Target:  5'- aAGCugGGGGCgGGUacGUguacUACGAGGa -3'
miRNA:   3'- gUCGugCUCCGaCCG--CAa---GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 100666 0.66 0.83711
Target:  5'- gAGCGCGGcGuGCUGGCGcucgUCGCGAc-- -3'
miRNA:   3'- gUCGUGCU-C-CGACCGCa---AGUGCUccc -5'
29504 5' -57.3 NC_006151.1 + 77512 0.66 0.835477
Target:  5'- -cGCACGGaGCUGGCGcgccucggccgCGCGuGGGc -3'
miRNA:   3'- guCGUGCUcCGACCGCaa---------GUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 141493 0.66 0.85303
Target:  5'- gAGCcucCGcGGCgacgGGCGUcucCACGGGGGc -3'
miRNA:   3'- gUCGu--GCuCCGa---CCGCAa--GUGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.