Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29504 | 5' | -57.3 | NC_006151.1 | + | 71950 | 0.68 | 0.756371 |
Target: 5'- gAGCGCGuGGCcgccucGGCGUugUCGCGgugcggcGGGGg -3' miRNA: 3'- gUCGUGCuCCGa-----CCGCA--AGUGC-------UCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 141749 | 0.68 | 0.747794 |
Target: 5'- gGGCGCGGGGCgcgcgccccggUGGCGUcgccgguucugUCcCGGGGa -3' miRNA: 3'- gUCGUGCUCCG-----------ACCGCA-----------AGuGCUCCc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 20455 | 0.68 | 0.73817 |
Target: 5'- gGGCuCGGGGgUGGCGccggUCcccCGGGGGg -3' miRNA: 3'- gUCGuGCUCCgACCGCa---AGu--GCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 67437 | 0.68 | 0.73817 |
Target: 5'- uUAGCuCGGGGaUGGCGcggGCGGGGGg -3' miRNA: 3'- -GUCGuGCUCCgACCGCaagUGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 93665 | 0.68 | 0.73817 |
Target: 5'- cCAGCAgGAGGCUGuCG--CGCGGGGc -3' miRNA: 3'- -GUCGUgCUCCGACcGCaaGUGCUCCc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 14475 | 0.68 | 0.73817 |
Target: 5'- gGGCGgGuGGGCgggugGGCGggggUCGgGAGGGa -3' miRNA: 3'- gUCGUgC-UCCGa----CCGCa---AGUgCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 49281 | 0.68 | 0.73817 |
Target: 5'- gCGGCucuGCGAGacccgccccaaGCUGGUGUUCAUGcucuGGGg -3' miRNA: 3'- -GUCG---UGCUC-----------CGACCGCAAGUGCu---CCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 88379 | 0.68 | 0.73817 |
Target: 5'- uCGGCGCGAGcGCguccgcGGCGUccgcggcCGCGAGGc -3' miRNA: 3'- -GUCGUGCUC-CGa-----CCGCAa------GUGCUCCc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 89156 | 0.68 | 0.728455 |
Target: 5'- -cGCGCccgccucGGGCgaGGCGggCGCGGGGGu -3' miRNA: 3'- guCGUGc------UCCGa-CCGCaaGUGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 82416 | 0.68 | 0.728455 |
Target: 5'- gCGGCcccgaGAGGCgcgGGCGcUCGCGcGGGc -3' miRNA: 3'- -GUCGug---CUCCGa--CCGCaAGUGCuCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 95424 | 0.69 | 0.718658 |
Target: 5'- -uGCA-GAGGUUGGaCGUg-GCGAGGGc -3' miRNA: 3'- guCGUgCUCCGACC-GCAagUGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 114901 | 0.69 | 0.714719 |
Target: 5'- gGGCGCGAGGCccgGGCGcacggccccggcgUCGCGcucggccuccGGGGu -3' miRNA: 3'- gUCGUGCUCCGa--CCGCa------------AGUGC----------UCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 132814 | 0.69 | 0.708789 |
Target: 5'- aCAGCGCGuccGGGCUGGCcgccCGCGGGa- -3' miRNA: 3'- -GUCGUGC---UCCGACCGcaa-GUGCUCcc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 128045 | 0.69 | 0.698856 |
Target: 5'- gCGGCAgCGGcGGCagcGGCGgcugCGCGGGGGc -3' miRNA: 3'- -GUCGU-GCU-CCGa--CCGCaa--GUGCUCCC- -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 110867 | 0.69 | 0.698856 |
Target: 5'- -cGCugGuggcgaacauGGGCUGGCGcucCACGAGGu -3' miRNA: 3'- guCGugC----------UCCGACCGCaa-GUGCUCCc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 75722 | 0.69 | 0.698856 |
Target: 5'- cCAGCgccgucACGAGGUUGGUGUUgGCGAu-- -3' miRNA: 3'- -GUCG------UGCUCCGACCGCAAgUGCUccc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 88613 | 0.69 | 0.695865 |
Target: 5'- gCGGCGCGcucaggccgaacucGGGCUGGCuGUaCAgGAGGa -3' miRNA: 3'- -GUCGUGC--------------UCCGACCG-CAaGUgCUCCc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 99608 | 0.69 | 0.694867 |
Target: 5'- -cGCGCcGGGCUGGCGcacagcgccgcgCGCGAGGc -3' miRNA: 3'- guCGUGcUCCGACCGCaa----------GUGCUCCc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 57199 | 0.69 | 0.688868 |
Target: 5'- uGGCGCGAGGCgaaGGCccgcUCgACGAGGc -3' miRNA: 3'- gUCGUGCUCCGa--CCGca--AG-UGCUCCc -5' |
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29504 | 5' | -57.3 | NC_006151.1 | + | 134997 | 0.69 | 0.678834 |
Target: 5'- gGGCGCGuc-UUGGCGggggCGCGGGGGg -3' miRNA: 3'- gUCGUGCuccGACCGCaa--GUGCUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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