miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 64752 0.66 0.845165
Target:  5'- gAGCAgCGGGGCcacCGUgCGCGGGGGc -3'
miRNA:   3'- gUCGU-GCUCCGaccGCAaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 67437 0.68 0.73817
Target:  5'- uUAGCuCGGGGaUGGCGcggGCGGGGGg -3'
miRNA:   3'- -GUCGuGCUCCgACCGCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 67864 0.67 0.828872
Target:  5'- cCGGCGCcGAGG-UGGCGcgCGCGccagcccgcGGGGc -3'
miRNA:   3'- -GUCGUG-CUCCgACCGCaaGUGC---------UCCC- -5'
29504 5' -57.3 NC_006151.1 + 70090 0.66 0.860699
Target:  5'- -uGCGCGuGGGC-GGCGaagggCGCGAGcGGg -3'
miRNA:   3'- guCGUGC-UCCGaCCGCaa---GUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 70919 0.68 0.757319
Target:  5'- uGGCGCGcGuGCUGGCGcugCACGAcGGc -3'
miRNA:   3'- gUCGUGCuC-CGACCGCaa-GUGCUcCC- -5'
29504 5' -57.3 NC_006151.1 + 71950 0.68 0.756371
Target:  5'- gAGCGCGuGGCcgccucGGCGUugUCGCGgugcggcGGGGg -3'
miRNA:   3'- gUCGUGCuCCGa-----CCGCA--AGUGC-------UCCC- -5'
29504 5' -57.3 NC_006151.1 + 72749 0.67 0.820459
Target:  5'- gCAGCGCcGAGucGCUGGCGcacaGCGGcGGGu -3'
miRNA:   3'- -GUCGUG-CUC--CGACCGCaag-UGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 73020 0.67 0.803136
Target:  5'- -cGCuGCGAGGCccagggauUGGCGguggCGCGGuGGGg -3'
miRNA:   3'- guCG-UGCUCCG--------ACCGCaa--GUGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 73836 0.71 0.597893
Target:  5'- uCGGCGC-AGGCaaagaGGCGUUCACGGgcgccGGGu -3'
miRNA:   3'- -GUCGUGcUCCGa----CCGCAAGUGCU-----CCC- -5'
29504 5' -57.3 NC_006151.1 + 74122 0.72 0.499206
Target:  5'- gGGCACGAGGUUGcGCGggugCAgcgggugcCGGGGGu -3'
miRNA:   3'- gUCGUGCUCCGAC-CGCaa--GU--------GCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 75391 0.73 0.489701
Target:  5'- aCGGCGCGGGGCggGuGCGUgCGCGGguccGGGa -3'
miRNA:   3'- -GUCGUGCUCCGa-C-CGCAaGUGCU----CCC- -5'
29504 5' -57.3 NC_006151.1 + 75722 0.69 0.698856
Target:  5'- cCAGCgccgucACGAGGUUGGUGUUgGCGAu-- -3'
miRNA:   3'- -GUCG------UGCUCCGACCGCAAgUGCUccc -5'
29504 5' -57.3 NC_006151.1 + 77512 0.66 0.835477
Target:  5'- -cGCACGGaGCUGGCGcgccucggccgCGCGuGGGc -3'
miRNA:   3'- guCGUGCUcCGACCGCaa---------GUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 80036 0.67 0.803136
Target:  5'- gGGgACGGGGgaGGCGggagUCugGcuguGGGa -3'
miRNA:   3'- gUCgUGCUCCgaCCGCa---AGugCu---CCC- -5'
29504 5' -57.3 NC_006151.1 + 81224 0.67 0.820459
Target:  5'- cCGGCGCGuGaacacgaaGCUGGCGccccCGCGcAGGGg -3'
miRNA:   3'- -GUCGUGCuC--------CGACCGCaa--GUGC-UCCC- -5'
29504 5' -57.3 NC_006151.1 + 82416 0.68 0.728455
Target:  5'- gCGGCcccgaGAGGCgcgGGCGcUCGCGcGGGc -3'
miRNA:   3'- -GUCGug---CUCCGa--CCGCaAGUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 82674 0.73 0.461715
Target:  5'- gCGGCGCGccgcGGGCgagGGCGgcggccccCGCGAGGGc -3'
miRNA:   3'- -GUCGUGC----UCCGa--CCGCaa------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 84132 0.69 0.678834
Target:  5'- aAGCGCG-GGCa-GCGg-CACGAGGGg -3'
miRNA:   3'- gUCGUGCuCCGacCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 84387 0.67 0.785205
Target:  5'- -cGCGCGGGGacgGGCGgggaGCGGGuGGg -3'
miRNA:   3'- guCGUGCUCCga-CCGCaag-UGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 88379 0.68 0.73817
Target:  5'- uCGGCGCGAGcGCguccgcGGCGUccgcggcCGCGAGGc -3'
miRNA:   3'- -GUCGUGCUC-CGa-----CCGCAa------GUGCUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.