miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 129762 0.67 0.794242
Target:  5'- cCAGCGCGaAGGCgacgagGGCGUcgcUCccgccgGCGuGGGc -3'
miRNA:   3'- -GUCGUGC-UCCGa-----CCGCA---AG------UGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 128045 0.69 0.698856
Target:  5'- gCGGCAgCGGcGGCagcGGCGgcugCGCGGGGGc -3'
miRNA:   3'- -GUCGU-GCU-CCGa--CCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 127443 0.67 0.785205
Target:  5'- -uGCGCGAGaGCcGGCGgcgCACGAagcgcuGGGc -3'
miRNA:   3'- guCGUGCUC-CGaCCGCaa-GUGCU------CCC- -5'
29504 5' -57.3 NC_006151.1 + 125740 0.66 0.83711
Target:  5'- aAGCugGGGGCgGGUacGUguacUACGAGGa -3'
miRNA:   3'- gUCGugCUCCGaCCG--CAa---GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 125632 0.67 0.811877
Target:  5'- gAGCACaacGGCacgGGCGUgauCGAGGGc -3'
miRNA:   3'- gUCGUGcu-CCGa--CCGCAaguGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 121411 0.68 0.757319
Target:  5'- gCGGCGCG-GGCggGGaCG-UCGCGGGGc -3'
miRNA:   3'- -GUCGUGCuCCGa-CC-GCaAGUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 117297 0.66 0.85303
Target:  5'- -cGCGCGAGcuGCUcGGCGcUCGCcacgccGAGGGc -3'
miRNA:   3'- guCGUGCUC--CGA-CCGCaAGUG------CUCCC- -5'
29504 5' -57.3 NC_006151.1 + 114901 0.69 0.714719
Target:  5'- gGGCGCGAGGCccgGGCGcacggccccggcgUCGCGcucggccuccGGGGu -3'
miRNA:   3'- gUCGUGCUCCGa--CCGCa------------AGUGC----------UCCC- -5'
29504 5' -57.3 NC_006151.1 + 111330 0.67 0.797817
Target:  5'- gGGCACGggcgagaugacggucGGGCggaugGGCGcgCgggGCGAGGGc -3'
miRNA:   3'- gUCGUGC---------------UCCGa----CCGCaaG---UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 111257 0.66 0.85303
Target:  5'- gCAGCAgCGAGGCcgGGaaccgCGCGGGcGGg -3'
miRNA:   3'- -GUCGU-GCUCCGa-CCgcaa-GUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 110867 0.69 0.698856
Target:  5'- -cGCugGuggcgaacauGGGCUGGCGcucCACGAGGu -3'
miRNA:   3'- guCGugC----------UCCGACCGCaa-GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 110790 0.77 0.300151
Target:  5'- -cGCGCGGGGCUagGGCGggggGCGAGGGc -3'
miRNA:   3'- guCGUGCUCCGA--CCGCaag-UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 106668 0.66 0.860699
Target:  5'- -uGCGCGAGGCcgcGGCGcucggCGCGccGGGc -3'
miRNA:   3'- guCGUGCUCCGa--CCGCaa---GUGCu-CCC- -5'
29504 5' -57.3 NC_006151.1 + 102975 0.71 0.597893
Target:  5'- aCGGCGCGcuGCUGGCGcagcugCugGAGGcGg -3'
miRNA:   3'- -GUCGUGCucCGACCGCaa----GugCUCC-C- -5'
29504 5' -57.3 NC_006151.1 + 101210 0.67 0.803136
Target:  5'- -uGCGCGAgGGCcaGGCGUggACGGGGc -3'
miRNA:   3'- guCGUGCU-CCGa-CCGCAagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 100666 0.66 0.83711
Target:  5'- gAGCGCGGcGuGCUGGCGcucgUCGCGAc-- -3'
miRNA:   3'- gUCGUGCU-C-CGACCGCa---AGUGCUccc -5'
29504 5' -57.3 NC_006151.1 + 99608 0.69 0.694867
Target:  5'- -cGCGCcGGGCUGGCGcacagcgccgcgCGCGAGGc -3'
miRNA:   3'- guCGUGcUCCGACCGCaa----------GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 99479 0.67 0.794242
Target:  5'- gCGGCGCuGGGGCUccccgagaagGGCGUggagCACGuGGu -3'
miRNA:   3'- -GUCGUG-CUCCGA----------CCGCAa---GUGCuCCc -5'
29504 5' -57.3 NC_006151.1 + 97360 0.67 0.794242
Target:  5'- aGGcCGCGGcGGC-GGCGggCGCGGcGGGg -3'
miRNA:   3'- gUC-GUGCU-CCGaCCGCaaGUGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 97212 0.67 0.828872
Target:  5'- -cGCACGuAGGC-GGCGUacaugCACGAguuccGGGu -3'
miRNA:   3'- guCGUGC-UCCGaCCGCAa----GUGCU-----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.