miRNA display CGI


Results 101 - 117 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 90744 0.68 0.766735
Target:  5'- gCGGCGCccucgGGGGC-GGCGggCACGGuggcGGGg -3'
miRNA:   3'- -GUCGUG-----CUCCGaCCGCaaGUGCU----CCC- -5'
29504 5' -57.3 NC_006151.1 + 10433 0.67 0.803136
Target:  5'- gGGC-CGAGGCcGGCGgg---GAGGGa -3'
miRNA:   3'- gUCGuGCUCCGaCCGCaagugCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 73020 0.67 0.803136
Target:  5'- -cGCuGCGAGGCccagggauUGGCGguggCGCGGuGGGg -3'
miRNA:   3'- guCG-UGCUCCG--------ACCGCaa--GUGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 101210 0.67 0.803136
Target:  5'- -uGCGCGAgGGCcaGGCGUggACGGGGc -3'
miRNA:   3'- guCGUGCU-CCGa-CCGCAagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 30329 0.67 0.820459
Target:  5'- aAGaugAgGAGGC-GGCGgcggCGCGAGGGc -3'
miRNA:   3'- gUCg--UgCUCCGaCCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 5243 0.67 0.820459
Target:  5'- -cGCGCGGcGGC-GGCGggggCcCGGGGGg -3'
miRNA:   3'- guCGUGCU-CCGaCCGCaa--GuGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 81224 0.67 0.820459
Target:  5'- cCGGCGCGuGaacacgaaGCUGGCGccccCGCGcAGGGg -3'
miRNA:   3'- -GUCGUGCuC--------CGACCGCaa--GUGC-UCCC- -5'
29504 5' -57.3 NC_006151.1 + 72749 0.67 0.820459
Target:  5'- gCAGCGCcGAGucGCUGGCGcacaGCGGcGGGu -3'
miRNA:   3'- -GUCGUG-CUC--CGACCGCaag-UGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 27458 0.67 0.820459
Target:  5'- uGGguCgGGGGCgGGCGgucgaGCGGGGGg -3'
miRNA:   3'- gUCguG-CUCCGaCCGCaag--UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 3356 0.67 0.820459
Target:  5'- gGGCGCG-GGCcaccucgGGCGggCaguaggcgGCGAGGGc -3'
miRNA:   3'- gUCGUGCuCCGa------CCGCaaG--------UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 33152 0.67 0.820459
Target:  5'- gAGUGCGAGGCgGGuCGgggGCGGGGa -3'
miRNA:   3'- gUCGUGCUCCGaCC-GCaagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 130522 0.67 0.811877
Target:  5'- gGGCGCG-GGCgucGCGUacacgcccccgCGCGAGGGc -3'
miRNA:   3'- gUCGUGCuCCGac-CGCAa----------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 5360 0.67 0.811877
Target:  5'- cCGGCGCGGcGCcGGCGgggcugUCucuGCGGGGGc -3'
miRNA:   3'- -GUCGUGCUcCGaCCGCa-----AG---UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 125632 0.67 0.811877
Target:  5'- gAGCACaacGGCacgGGCGUgauCGAGGGc -3'
miRNA:   3'- gUCGUGcu-CCGa--CCGCAaguGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 19058 0.67 0.811877
Target:  5'- gGGCGC-AGGCacucgGGCGcgCGCGGGuGGu -3'
miRNA:   3'- gUCGUGcUCCGa----CCGCaaGUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 54646 0.67 0.81101
Target:  5'- gCGGCGCGAGcGCUGcGUGgacgagCACGAccuggccGGGc -3'
miRNA:   3'- -GUCGUGCUC-CGAC-CGCaa----GUGCU-------CCC- -5'
29504 5' -57.3 NC_006151.1 + 22868 0.68 0.766735
Target:  5'- gCAGgGCGGGGCUgccGGUGggggUCACGAagaugucagaGGGc -3'
miRNA:   3'- -GUCgUGCUCCGA---CCGCa---AGUGCU----------CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.