miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 141493 0.66 0.85303
Target:  5'- gAGCcucCGcGGCgacgGGCGUcucCACGGGGGc -3'
miRNA:   3'- gUCGu--GCuCCGa---CCGCAa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 93795 0.66 0.845165
Target:  5'- gCAGCACGAGGCcgagguuggaUGGCcucgUCGCGGc-- -3'
miRNA:   3'- -GUCGUGCUCCG----------ACCGca--AGUGCUccc -5'
29504 5' -57.3 NC_006151.1 + 64752 0.66 0.845165
Target:  5'- gAGCAgCGGGGCcacCGUgCGCGGGGGc -3'
miRNA:   3'- gUCGU-GCUCCGaccGCAaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 60896 0.66 0.83711
Target:  5'- -cGCGCGAGcagGGCGUcCACGcGGGc -3'
miRNA:   3'- guCGUGCUCcgaCCGCAaGUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 125740 0.66 0.83711
Target:  5'- aAGCugGGGGCgGGUacGUguacUACGAGGa -3'
miRNA:   3'- gUCGugCUCCGaCCG--CAa---GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 100666 0.66 0.83711
Target:  5'- gAGCGCGGcGuGCUGGCGcucgUCGCGAc-- -3'
miRNA:   3'- gUCGUGCU-C-CGACCGCa---AGUGCUccc -5'
29504 5' -57.3 NC_006151.1 + 77512 0.66 0.835477
Target:  5'- -cGCACGGaGCUGGCGcgccucggccgCGCGuGGGc -3'
miRNA:   3'- guCGUGCUcCGACCGCaa---------GUGCuCCC- -5'
29504 5' -57.3 NC_006151.1 + 41468 0.67 0.828872
Target:  5'- cCGGCgggacgaugACGAcGGCgaccGCGUggCGCGAGGGg -3'
miRNA:   3'- -GUCG---------UGCU-CCGac--CGCAa-GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 67864 0.67 0.828872
Target:  5'- cCGGCGCcGAGG-UGGCGcgCGCGccagcccgcGGGGc -3'
miRNA:   3'- -GUCGUG-CUCCgACCGCaaGUGC---------UCCC- -5'
29504 5' -57.3 NC_006151.1 + 97212 0.67 0.828872
Target:  5'- -cGCACGuAGGC-GGCGUacaugCACGAguuccGGGu -3'
miRNA:   3'- guCGUGC-UCCGaCCGCAa----GUGCU-----CCC- -5'
29504 5' -57.3 NC_006151.1 + 33152 0.67 0.820459
Target:  5'- gAGUGCGAGGCgGGuCGgggGCGGGGa -3'
miRNA:   3'- gUCGUGCUCCGaCC-GCaagUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 3356 0.67 0.820459
Target:  5'- gGGCGCG-GGCcaccucgGGCGggCaguaggcgGCGAGGGc -3'
miRNA:   3'- gUCGUGCuCCGa------CCGCaaG--------UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 27458 0.67 0.820459
Target:  5'- uGGguCgGGGGCgGGCGgucgaGCGGGGGg -3'
miRNA:   3'- gUCguG-CUCCGaCCGCaag--UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 72749 0.67 0.820459
Target:  5'- gCAGCGCcGAGucGCUGGCGcacaGCGGcGGGu -3'
miRNA:   3'- -GUCGUG-CUC--CGACCGCaag-UGCU-CCC- -5'
29504 5' -57.3 NC_006151.1 + 81224 0.67 0.820459
Target:  5'- cCGGCGCGuGaacacgaaGCUGGCGccccCGCGcAGGGg -3'
miRNA:   3'- -GUCGUGCuC--------CGACCGCaa--GUGC-UCCC- -5'
29504 5' -57.3 NC_006151.1 + 5243 0.67 0.820459
Target:  5'- -cGCGCGGcGGC-GGCGggggCcCGGGGGg -3'
miRNA:   3'- guCGUGCU-CCGaCCGCaa--GuGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 30329 0.67 0.820459
Target:  5'- aAGaugAgGAGGC-GGCGgcggCGCGAGGGc -3'
miRNA:   3'- gUCg--UgCUCCGaCCGCaa--GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 5360 0.67 0.811877
Target:  5'- cCGGCGCGGcGCcGGCGgggcugUCucuGCGGGGGc -3'
miRNA:   3'- -GUCGUGCUcCGaCCGCa-----AG---UGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 125632 0.67 0.811877
Target:  5'- gAGCACaacGGCacgGGCGUgauCGAGGGc -3'
miRNA:   3'- gUCGUGcu-CCGa--CCGCAaguGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 19058 0.67 0.811877
Target:  5'- gGGCGC-AGGCacucgGGCGcgCGCGGGuGGu -3'
miRNA:   3'- gUCGUGcUCCGa----CCGCaaGUGCUC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.