miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 104568 0.66 0.602498
Target:  5'- gGGCgCGCGGCGcgcggacgugcugcaGGCCgGCGGCagccgCGGc -3'
miRNA:   3'- gCCG-GCGCCGC---------------UCGGgUGCUGga---GCU- -5'
29505 3' -63.7 NC_006151.1 + 2111 0.66 0.598643
Target:  5'- gGGCCGCGGgGccGGCCguCGccGCCgCGGa -3'
miRNA:   3'- gCCGGCGCCgC--UCGGguGC--UGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 49955 0.66 0.598643
Target:  5'- uGGCCGCGGCccuGGCC---GGCCUCc- -3'
miRNA:   3'- gCCGGCGCCGc--UCGGgugCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 68773 0.66 0.598643
Target:  5'- uGGCgcgCGCGGCGAGgugcgccgCCGCGGCCgUCa- -3'
miRNA:   3'- gCCG---GCGCCGCUCg-------GGUGCUGG-AGcu -5'
29505 3' -63.7 NC_006151.1 + 95873 0.66 0.598643
Target:  5'- uGGCCGCcgucauCGAGUCCAgcGCCUUGAg -3'
miRNA:   3'- gCCGGCGcc----GCUCGGGUgcUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 102550 0.66 0.598643
Target:  5'- uGGCgCGCGcGCGGGCCCuguuugcgcGCGcCCgcgcgcgCGAg -3'
miRNA:   3'- gCCG-GCGC-CGCUCGGG---------UGCuGGa------GCU- -5'
29505 3' -63.7 NC_006151.1 + 133420 0.66 0.598643
Target:  5'- uGGCCGCGGacgcggGGGUCUugGCGGCCgaggCGc -3'
miRNA:   3'- gCCGGCGCCg-----CUCGGG--UGCUGGa---GCu -5'
29505 3' -63.7 NC_006151.1 + 13967 0.66 0.598643
Target:  5'- cCGGCCaUGGgggagcCGGGCCCGCGuCCcCGGg -3'
miRNA:   3'- -GCCGGcGCC------GCUCGGGUGCuGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 57474 0.66 0.598643
Target:  5'- cCGcGCCGCGGCG-GCCUcgcagGCGACg-CGc -3'
miRNA:   3'- -GC-CGGCGCCGCuCGGG-----UGCUGgaGCu -5'
29505 3' -63.7 NC_006151.1 + 64123 0.66 0.598643
Target:  5'- cCGGCgGUGGCGcGCCCGucuCgUCGAa -3'
miRNA:   3'- -GCCGgCGCCGCuCGGGUgcuGgAGCU- -5'
29505 3' -63.7 NC_006151.1 + 82010 0.66 0.598643
Target:  5'- gCGGCCGCGuGCGccGCCgACaGCUgggCGAg -3'
miRNA:   3'- -GCCGGCGC-CGCu-CGGgUGcUGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 53941 0.66 0.598643
Target:  5'- -cGCCGCGGCGAGggacuugaaCCACG-CCagCGGc -3'
miRNA:   3'- gcCGGCGCCGCUCg--------GGUGCuGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 111979 0.66 0.59768
Target:  5'- gGGUgGgGGUGAGCggugcggCUACGACgUCGAc -3'
miRNA:   3'- gCCGgCgCCGCUCG-------GGUGCUGgAGCU- -5'
29505 3' -63.7 NC_006151.1 + 65781 0.66 0.596717
Target:  5'- cCGGCgGCGGCGAuggcgccGCCCggcgcggACGugCcgCGGu -3'
miRNA:   3'- -GCCGgCGCCGCU-------CGGG-------UGCugGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 113896 0.66 0.595754
Target:  5'- uCGGCCGC-GCGGcgcaagacgcugacGCgCGCGGCCcgCGAu -3'
miRNA:   3'- -GCCGGCGcCGCU--------------CGgGUGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 67876 0.66 0.592867
Target:  5'- uGGCgCGCGcGCcAGCCCGCgGggcacagcgccagcaGCCUCGGg -3'
miRNA:   3'- gCCG-GCGC-CGcUCGGGUG-C---------------UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 139917 0.66 0.589021
Target:  5'- cCGcGCCGCGGgcucgucgccgUGGGCCgC-CGuCCUCGAg -3'
miRNA:   3'- -GC-CGGCGCC-----------GCUCGG-GuGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 133671 0.66 0.589021
Target:  5'- cCGGCgCgGCGGCGcGCCCccgagGCGGUCUCGu -3'
miRNA:   3'- -GCCG-G-CGCCGCuCGGG-----UGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 52859 0.66 0.589021
Target:  5'- gCGGCUGCuGCGuGGCCuCGCGguACCggUCGAa -3'
miRNA:   3'- -GCCGGCGcCGC-UCGG-GUGC--UGG--AGCU- -5'
29505 3' -63.7 NC_006151.1 + 39155 0.66 0.589021
Target:  5'- cCGcGCCGCGGCG-GCCUcuCGGCgcugCUCGc -3'
miRNA:   3'- -GC-CGGCGCCGCuCGGGu-GCUG----GAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.