miRNA display CGI


Results 81 - 100 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 133459 0.66 0.589021
Target:  5'- uGGCCcCGGuCGAgGCCCgcgagGCGGCCgCGGg -3'
miRNA:   3'- gCCGGcGCC-GCU-CGGG-----UGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 125237 0.66 0.589021
Target:  5'- nGGCC-CGGCGcuCCCcCGGCC-CGGc -3'
miRNA:   3'- gCCGGcGCCGCucGGGuGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 121051 0.66 0.589021
Target:  5'- uGGCCugcccGCGcGUGGGCuUCACGugCUCGc -3'
miRNA:   3'- gCCGG-----CGC-CGCUCG-GGUGCugGAGCu -5'
29505 3' -63.7 NC_006151.1 + 104081 0.66 0.589021
Target:  5'- uGcGCCGCGcCGAGCagCACGcCUUCGAc -3'
miRNA:   3'- gC-CGGCGCcGCUCGg-GUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 103056 0.66 0.589021
Target:  5'- uGGCCGaGGCGcaGGCgCACGggcACCUgGAg -3'
miRNA:   3'- gCCGGCgCCGC--UCGgGUGC---UGGAgCU- -5'
29505 3' -63.7 NC_006151.1 + 98117 0.66 0.589021
Target:  5'- aGGCgCGCGcGCgccGAGCCCACGguuaguguGCC-CGGc -3'
miRNA:   3'- gCCG-GCGC-CG---CUCGGGUGC--------UGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 64240 0.66 0.589021
Target:  5'- gGGCCGCGacggcggcGCGGGCC-ACGcUCUCGu -3'
miRNA:   3'- gCCGGCGC--------CGCUCGGgUGCuGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 59614 0.66 0.589021
Target:  5'- aCGGCCccggaGGCGuaguGCCCguacACGGCCcCGAa -3'
miRNA:   3'- -GCCGGcg---CCGCu---CGGG----UGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 49033 0.66 0.589021
Target:  5'- gGGCCG-GGCcaGGCCCACGGgCUgGc -3'
miRNA:   3'- gCCGGCgCCGc-UCGGGUGCUgGAgCu -5'
29505 3' -63.7 NC_006151.1 + 135373 0.67 0.53207
Target:  5'- uGGCCGCGuGCG---CCGCGACCaCGGc -3'
miRNA:   3'- gCCGGCGC-CGCucgGGUGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 116204 0.67 0.538625
Target:  5'- uGGCgCGCgcgagcgugauguuGGCGAGCcgcgCCACGGCCgagagcUCGAg -3'
miRNA:   3'- gCCG-GCG--------------CCGCUCG----GGUGCUGG------AGCU- -5'
29505 3' -63.7 NC_006151.1 + 77531 0.67 0.538625
Target:  5'- uCGGCCGCGcGUGGGCCgCcccgcaggggagcgACGACgUCu- -3'
miRNA:   3'- -GCCGGCGC-CGCUCGG-G--------------UGCUGgAGcu -5'
29505 3' -63.7 NC_006151.1 + 103851 0.67 0.540503
Target:  5'- gCGGCUGCGcGCGcAGCCCgACGaggggacGCUggUCGAg -3'
miRNA:   3'- -GCCGGCGC-CGC-UCGGG-UGC-------UGG--AGCU- -5'
29505 3' -63.7 NC_006151.1 + 56934 0.67 0.541442
Target:  5'- uGGCgGCGGgGcgucGCCgGCGcucagcGCCUCGAg -3'
miRNA:   3'- gCCGgCGCCgCu---CGGgUGC------UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 31764 0.67 0.541442
Target:  5'- -uGCgGCGGCGGGCgCGCG-CCgggCGGc -3'
miRNA:   3'- gcCGgCGCCGCUCGgGUGCuGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 52774 0.67 0.541442
Target:  5'- aGcGCCGCGGCGuccuGgUCGCGGCuCUgCGAg -3'
miRNA:   3'- gC-CGGCGCCGCu---CgGGUGCUG-GA-GCU- -5'
29505 3' -63.7 NC_006151.1 + 129866 0.67 0.541442
Target:  5'- aGGcCCGUGGCGucgcGCgCCGCcgccACCUCGGu -3'
miRNA:   3'- gCC-GGCGCCGCu---CG-GGUGc---UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 57977 0.67 0.541442
Target:  5'- cCGGUgGgCGGCGAGCgcgCCGCGgaccGCCUCc- -3'
miRNA:   3'- -GCCGgC-GCCGCUCG---GGUGC----UGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 91742 0.67 0.541442
Target:  5'- --aUCGCGGCGGGCgaGCGGgCUCGGg -3'
miRNA:   3'- gccGGCGCCGCUCGggUGCUgGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 122141 0.67 0.53207
Target:  5'- uCGGCCGUGGaCGAGUUccucgcgcgCACGAUCggCGGc -3'
miRNA:   3'- -GCCGGCGCC-GCUCGG---------GUGCUGGa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.