miRNA display CGI


Results 101 - 120 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 102951 0.67 0.522756
Target:  5'- uGGaCGCGGCGcccgccGCCCACGACggCGc -3'
miRNA:   3'- gCCgGCGCCGCu-----CGGGUGCUGgaGCu -5'
29505 3' -63.7 NC_006151.1 + 26352 0.67 0.522756
Target:  5'- gGGCgGCGGCGGGCCgcgucggggcgCGCGuCCccCGGc -3'
miRNA:   3'- gCCGgCGCCGCUCGG-----------GUGCuGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 64536 0.67 0.521828
Target:  5'- gCGGCCgcgucggggGCGGCGAGgCCGUGGCgcgccagCUCGAc -3'
miRNA:   3'- -GCCGG---------CGCCGCUCgGGUGCUG-------GAGCU- -5'
29505 3' -63.7 NC_006151.1 + 53412 0.67 0.521828
Target:  5'- aCGGCCGUgagcaGGUGccGCCCGagcagccCGGCCUCGu -3'
miRNA:   3'- -GCCGGCG-----CCGCu-CGGGU-------GCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 39407 0.67 0.529269
Target:  5'- cCGGCCGUGGgGGacuaccacgucuacGUCCGCGuccGCCUgGAc -3'
miRNA:   3'- -GCCGGCGCCgCU--------------CGGGUGC---UGGAgCU- -5'
29505 3' -63.7 NC_006151.1 + 89562 0.67 0.531136
Target:  5'- aGGCCGCgaGGCuGAugggcacGCCCAUGGgCUCGc -3'
miRNA:   3'- gCCGGCG--CCG-CU-------CGGGUGCUgGAGCu -5'
29505 3' -63.7 NC_006151.1 + 91742 0.67 0.541442
Target:  5'- --aUCGCGGCGGGCgaGCGGgCUCGGg -3'
miRNA:   3'- gccGGCGCCGCUCGggUGCUgGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 57977 0.67 0.541442
Target:  5'- cCGGUgGgCGGCGAGCgcgCCGCGgaccGCCUCc- -3'
miRNA:   3'- -GCCGgC-GCCGCUCG---GGUGC----UGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 129866 0.67 0.541442
Target:  5'- aGGcCCGUGGCGucgcGCgCCGCcgccACCUCGGu -3'
miRNA:   3'- gCC-GGCGCCGCu---CG-GGUGc---UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 52774 0.67 0.541442
Target:  5'- aGcGCCGCGGCGuccuGgUCGCGGCuCUgCGAg -3'
miRNA:   3'- gC-CGGCGCCGCu---CgGGUGCUG-GA-GCU- -5'
29505 3' -63.7 NC_006151.1 + 31764 0.67 0.541442
Target:  5'- -uGCgGCGGCGGGCgCGCG-CCgggCGGc -3'
miRNA:   3'- gcCGgCGCCGCUCGgGUGCuGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 56934 0.67 0.541442
Target:  5'- uGGCgGCGGgGcgucGCCgGCGcucagcGCCUCGAg -3'
miRNA:   3'- gCCGgCGCCgCu---CGGgUGC------UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 103851 0.67 0.540503
Target:  5'- gCGGCUGCGcGCGcAGCCCgACGaggggacGCUggUCGAg -3'
miRNA:   3'- -GCCGGCGC-CGC-UCGGG-UGC-------UGG--AGCU- -5'
29505 3' -63.7 NC_006151.1 + 77531 0.67 0.538625
Target:  5'- uCGGCCGCGcGUGGGCCgCcccgcaggggagcgACGACgUCu- -3'
miRNA:   3'- -GCCGGCGC-CGCUCGG-G--------------UGCUGgAGcu -5'
29505 3' -63.7 NC_006151.1 + 116204 0.67 0.538625
Target:  5'- uGGCgCGCgcgagcgugauguuGGCGAGCcgcgCCACGGCCgagagcUCGAg -3'
miRNA:   3'- gCCG-GCG--------------CCGCUCG----GGUGCUGG------AGCU- -5'
29505 3' -63.7 NC_006151.1 + 135373 0.67 0.53207
Target:  5'- uGGCCGCGuGCG---CCGCGACCaCGGc -3'
miRNA:   3'- gCCGGCGC-CGCucgGGUGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 122141 0.67 0.53207
Target:  5'- uCGGCCGUGGaCGAGUUccucgcgcgCACGAUCggCGGc -3'
miRNA:   3'- -GCCGGCGCC-GCUCGG---------GUGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 83069 0.67 0.53207
Target:  5'- uGGCCaCGaGCGcguccaucGCCCACGcgugcACCUCGAg -3'
miRNA:   3'- gCCGGcGC-CGCu-------CGGGUGC-----UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 4567 0.67 0.53207
Target:  5'- gCGGCaGCGGCGGGgUCACGcuGCCggUGAu -3'
miRNA:   3'- -GCCGgCGCCGCUCgGGUGC--UGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 120751 0.67 0.531136
Target:  5'- cCGGCCGCGucauggccuggguGCGGcGCCCgcuggcggacGCGGCCgacgCGGa -3'
miRNA:   3'- -GCCGGCGC-------------CGCU-CGGG----------UGCUGGa---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.