miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 23050 1.08 0.000794
Target:  5'- gCGGCCGCGGCGAGCCCACGACCUCGAu -3'
miRNA:   3'- -GCCGGCGCCGCUCGGGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 23154 0.87 0.026572
Target:  5'- uCGGCgggaGCGGCgggaGAGCCCACGACCUCGAu -3'
miRNA:   3'- -GCCGg---CGCCG----CUCGGGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 29967 0.83 0.04936
Target:  5'- uCGGaCCGCGGCGAuggugaauggGCCCGCGGCCUgGAc -3'
miRNA:   3'- -GCC-GGCGCCGCU----------CGGGUGCUGGAgCU- -5'
29505 3' -63.7 NC_006151.1 + 127395 0.83 0.04936
Target:  5'- gGGCCGCGGCcgagucgacggGAGCCCGCGgggucGCCUCGGc -3'
miRNA:   3'- gCCGGCGCCG-----------CUCGGGUGC-----UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 4021 0.82 0.059034
Target:  5'- gGGCCGCGGCGuaGGUCCagGCGGCCUCGc -3'
miRNA:   3'- gCCGGCGCCGC--UCGGG--UGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 96226 0.81 0.07308
Target:  5'- gCGGCCGCGGCGAgGCgcacaaagaacugguCCAUGGCCUCGc -3'
miRNA:   3'- -GCCGGCGCCGCU-CG---------------GGUGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 134800 0.8 0.08208
Target:  5'- aGGCCGCGGCG-GCCCGCgccgGACC-CGGa -3'
miRNA:   3'- gCCGGCGCCGCuCGGGUG----CUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 90107 0.8 0.08208
Target:  5'- aGGCCGCGGCGAcGCCCAUGACg---- -3'
miRNA:   3'- gCCGGCGCCGCU-CGGGUGCUGgagcu -5'
29505 3' -63.7 NC_006151.1 + 118879 0.79 0.09783
Target:  5'- gCGGCggCGCGGCGGcgacgcggccGCCgGCGGCCUCGAg -3'
miRNA:   3'- -GCCG--GCGCCGCU----------CGGgUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 21542 0.79 0.090757
Target:  5'- gGGCCGgGGcCGGGgCCugGGCCUCGGc -3'
miRNA:   3'- gCCGGCgCC-GCUCgGGugCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 49841 0.78 0.110785
Target:  5'- aCGGCgGCGGCGGGCCCGCG-CUgggCGc -3'
miRNA:   3'- -GCCGgCGCCGCUCGGGUGCuGGa--GCu -5'
29505 3' -63.7 NC_006151.1 + 6139 0.78 0.102831
Target:  5'- cCGGCCGCGGCcgcGAGgaCgGCGGCCUCGGc -3'
miRNA:   3'- -GCCGGCGCCG---CUCg-GgUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 5088 0.78 0.116118
Target:  5'- gGGCCGCGGCGGGCgCCggcggagacggugGCGGCC-CGGc -3'
miRNA:   3'- gCCGGCGCCGCUCG-GG-------------UGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 4791 0.78 0.105159
Target:  5'- cCGGCCGCGGCGcgguagcGGgCCGCGGCCUggCGGa -3'
miRNA:   3'- -GCCGGCGCCGC-------UCgGGUGCUGGA--GCU- -5'
29505 3' -63.7 NC_006151.1 + 131116 0.77 0.119314
Target:  5'- cCGGCCGCGGCGcgggaggccgcGGCgCCGCGGCCgUCa- -3'
miRNA:   3'- -GCCGGCGCCGC-----------UCG-GGUGCUGG-AGcu -5'
29505 3' -63.7 NC_006151.1 + 38055 0.77 0.12229
Target:  5'- cCGGCCGCccuCGGGCCCGCcuGCCUCGAg -3'
miRNA:   3'- -GCCGGCGcc-GCUCGGGUGc-UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 55081 0.77 0.12845
Target:  5'- uCGGCCGCGGCGcGCCUcguGCG-CCUCa- -3'
miRNA:   3'- -GCCGGCGCCGCuCGGG---UGCuGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 112172 0.77 0.118434
Target:  5'- aCGGCCGCGGCGAagcgaucgcgccgcGCCCGCagcGCCUCc- -3'
miRNA:   3'- -GCCGGCGCCGCU--------------CGGGUGc--UGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 57226 0.77 0.125335
Target:  5'- aGGCCGUcgcaGGCGGcGCgCGCGGCCUCGGc -3'
miRNA:   3'- gCCGGCG----CCGCU-CGgGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 13108 0.76 0.145123
Target:  5'- aGGUCGCGGCGGGucacgcgcgcuCCCGCGACUUCc- -3'
miRNA:   3'- gCCGGCGCCGCUC-----------GGGUGCUGGAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.