Results 21 - 40 of 385 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 135938 | 0.76 | 0.148327 |
Target: 5'- -uGCCGCGGgGAGCCCcucgcggcgcgggACGuCCUCGAg -3' miRNA: 3'- gcCGGCGCCgCUCGGG-------------UGCuGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 113114 | 0.76 | 0.155303 |
Target: 5'- gGGCCGCGGacgcggacgccgcCGGGCCCGgcuacgcCGACCUCGc -3' miRNA: 3'- gCCGGCGCC-------------GCUCGGGU-------GCUGGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 121329 | 0.76 | 0.148687 |
Target: 5'- gCGGCCGcCGaGCuGGUgCGCGACCUCGAg -3' miRNA: 3'- -GCCGGC-GC-CGcUCGgGUGCUGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 13108 | 0.76 | 0.145123 |
Target: 5'- aGGUCGCGGCGGGucacgcgcgcuCCCGCGACUUCc- -3' miRNA: 3'- gCCGGCGCCGCUC-----------GGGUGCUGGAGcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 57511 | 0.75 | 0.180172 |
Target: 5'- uCGGCCGCGGCGGcggcggccGCCUccggcGCGGCCgCGGg -3' miRNA: 3'- -GCCGGCGCCGCU--------CGGG-----UGCUGGaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 38391 | 0.75 | 0.180172 |
Target: 5'- cCGGCgGCGGCGGGCgCCcccucCGGCCUCc- -3' miRNA: 3'- -GCCGgCGCCGCUCG-GGu----GCUGGAGcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 65989 | 0.75 | 0.1845 |
Target: 5'- cCGGCCGCGaGCGcGUCCuccGCGGCgUCGAg -3' miRNA: 3'- -GCCGGCGC-CGCuCGGG---UGCUGgAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 124073 | 0.75 | 0.180172 |
Target: 5'- aCGGCCGUGcGCGcGgCCGCGACCgagCGGg -3' miRNA: 3'- -GCCGGCGC-CGCuCgGGUGCUGGa--GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 662 | 0.75 | 0.180172 |
Target: 5'- gCGGCCGgGGCGGGCuCCGCGGaucgcaUCGGc -3' miRNA: 3'- -GCCGGCgCCGCUCG-GGUGCUgg----AGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 139654 | 0.75 | 0.171786 |
Target: 5'- gGGUCGCGGCGGGCgCGCcGCC-CGAc -3' miRNA: 3'- gCCGGCGCCGCUCGgGUGcUGGaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 119091 | 0.75 | 0.16533 |
Target: 5'- aGGCCGCGGCgcucggcgcguacguGAGCCgCGCGgccgGCCUCGu -3' miRNA: 3'- gCCGGCGCCG---------------CUCGG-GUGC----UGGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 2279 | 0.75 | 0.180172 |
Target: 5'- aCGGCCgGCGGgGcGCCCGCGGCggCGAc -3' miRNA: 3'- -GCCGG-CGCCgCuCGGGUGCUGgaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 5876 | 0.75 | 0.180172 |
Target: 5'- gGGCCGCcGgGGGCCC-CGGCCUCu- -3' miRNA: 3'- gCCGGCGcCgCUCGGGuGCUGGAGcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 97365 | 0.75 | 0.171786 |
Target: 5'- gCGGCgGCGGCGGGCgCGgcgggggcguCGGCCUCGu -3' miRNA: 3'- -GCCGgCGCCGCUCGgGU----------GCUGGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 44657 | 0.75 | 0.178892 |
Target: 5'- uGGCCGCGGC-AGCCCgacacaugcgcacgGCGGCCggCGGc -3' miRNA: 3'- gCCGGCGCCGcUCGGG--------------UGCUGGa-GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 64384 | 0.75 | 0.180172 |
Target: 5'- aGGCCGUGGCcAGCCCGCGGCg---- -3' miRNA: 3'- gCCGGCGCCGcUCGGGUGCUGgagcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 123917 | 0.74 | 0.202739 |
Target: 5'- gCGGCCGUGacGCGGGCCgccuCGGCCUCGc -3' miRNA: 3'- -GCCGGCGC--CGCUCGGgu--GCUGGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 130734 | 0.74 | 0.212433 |
Target: 5'- gCGGCCGCGGCGcAGCgCCACccacgacggcauGGCCagGAa -3' miRNA: 3'- -GCCGGCGCCGC-UCG-GGUG------------CUGGagCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 32242 | 0.74 | 0.202739 |
Target: 5'- uGGCCGCGGCGAccGCcgCCGCcGCuCUCGAg -3' miRNA: 3'- gCCGGCGCCGCU--CG--GGUGcUG-GAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 81498 | 0.74 | 0.207053 |
Target: 5'- gCGGCCGuCGGCGAgagcgcgGCCCGCguGAgCUCGGc -3' miRNA: 3'- -GCCGGC-GCCGCU-------CGGGUG--CUgGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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