Results 61 - 80 of 385 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 129459 | 0.73 | 0.233018 |
Target: 5'- aCGGCCGUGGgcgggaCGAGCCCGuccaGGuCCUCGGa -3' miRNA: 3'- -GCCGGCGCC------GCUCGGGUg---CU-GGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 4182 | 0.73 | 0.24061 |
Target: 5'- gCGGCCGUcaccuccucgaggcaGGCGGGCCCgaggGCGGCCggggcgCGGg -3' miRNA: 3'- -GCCGGCG---------------CCGCUCGGG----UGCUGGa-----GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 25215 | 0.73 | 0.243926 |
Target: 5'- uGGCCuCGGCgGAG-CCGCGACCUCu- -3' miRNA: 3'- gCCGGcGCCG-CUCgGGUGCUGGAGcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 86182 | 0.73 | 0.23842 |
Target: 5'- uGGCCGCcgcgcugcccccGGCGGGCCCGCuGCCcaucaacaUCGAc -3' miRNA: 3'- gCCGGCG------------CCGCUCGGGUGcUGG--------AGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 106674 | 0.73 | 0.228245 |
Target: 5'- aGGCCGCGGCGcucggcgcgccgggcGCCgGCGACCUg-- -3' miRNA: 3'- gCCGGCGCCGCu--------------CGGgUGCUGGAgcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 10014 | 0.73 | 0.243926 |
Target: 5'- gCGGCgGCGGCGGuCgCCGCGGCCagGAg -3' miRNA: 3'- -GCCGgCGCCGCUcG-GGUGCUGGagCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 50691 | 0.73 | 0.23842 |
Target: 5'- -cGCCGCGGCaGcGUCCACG-CCUCGGc -3' miRNA: 3'- gcCGGCGCCG-CuCGGGUGCuGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 53989 | 0.72 | 0.278584 |
Target: 5'- gGGCguCGCGGCGAGCucccggacgcgcuCCACGAUcggCUCGAc -3' miRNA: 3'- gCCG--GCGCCGCUCG-------------GGUGCUG---GAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 66793 | 0.72 | 0.255255 |
Target: 5'- gCGGCgGCGGCgGGGCCCggggACGACgaCGGc -3' miRNA: 3'- -GCCGgCGCCG-CUCGGG----UGCUGgaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 48670 | 0.72 | 0.279204 |
Target: 5'- -cGCCGgGGCaGGGgCCGgGGCCUCGAa -3' miRNA: 3'- gcCGGCgCCG-CUCgGGUgCUGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 128016 | 0.72 | 0.278584 |
Target: 5'- gGGCgGCGGCGAcggcgucugcgacGCCCGCGGCagcggCGGc -3' miRNA: 3'- gCCGgCGCCGCU-------------CGGGUGCUGga---GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 50374 | 0.72 | 0.285464 |
Target: 5'- cCGGCgGgGGCGAGacgcgggcCCCGCGGuCCUCGc -3' miRNA: 3'- -GCCGgCgCCGCUC--------GGGUGCU-GGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 36503 | 0.72 | 0.267013 |
Target: 5'- cCGGU--CGGUGAGCCCgggccggcggcGCGGCCUCGGa -3' miRNA: 3'- -GCCGgcGCCGCUCGGG-----------UGCUGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 18431 | 0.72 | 0.273054 |
Target: 5'- gGGCCGcCGGCGGgcgucGCCCGCcuCCUCGu -3' miRNA: 3'- gCCGGC-GCCGCU-----CGGGUGcuGGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 122462 | 0.72 | 0.255255 |
Target: 5'- aCGGCgGCGGCGGGCgCCGaGGCCggggacgCGGg -3' miRNA: 3'- -GCCGgCGCCGCUCG-GGUgCUGGa------GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 3270 | 0.72 | 0.26108 |
Target: 5'- gCGGCgCGCGGCGAugugcGCCaggGCGGCCgggUCGAa -3' miRNA: 3'- -GCCG-GCGCCGCU-----CGGg--UGCUGG---AGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 22096 | 0.72 | 0.255255 |
Target: 5'- gGGCCGcCGGUGGG-CCACcGCCUCGu -3' miRNA: 3'- gCCGGC-GCCGCUCgGGUGcUGGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 91109 | 0.72 | 0.279204 |
Target: 5'- cCGGCCGCGGCGcccuuCgCCACGGCggCGAg -3' miRNA: 3'- -GCCGGCGCCGCuc---G-GGUGCUGgaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 64478 | 0.72 | 0.273054 |
Target: 5'- -cGCCGCGGCGGggacGCCCGCGGgCgCGGg -3' miRNA: 3'- gcCGGCGCCGCU----CGGGUGCUgGaGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 135490 | 0.72 | 0.279204 |
Target: 5'- gGGCCa-GGCG-GCgCGCGGCCUCGGc -3' miRNA: 3'- gCCGGcgCCGCuCGgGUGCUGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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