miRNA display CGI


Results 21 - 40 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 13108 0.76 0.145123
Target:  5'- aGGUCGCGGCGGGucacgcgcgcuCCCGCGACUUCc- -3'
miRNA:   3'- gCCGGCGCCGCUC-----------GGGUGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 135938 0.76 0.148327
Target:  5'- -uGCCGCGGgGAGCCCcucgcggcgcgggACGuCCUCGAg -3'
miRNA:   3'- gcCGGCGCCgCUCGGG-------------UGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 121329 0.76 0.148687
Target:  5'- gCGGCCGcCGaGCuGGUgCGCGACCUCGAg -3'
miRNA:   3'- -GCCGGC-GC-CGcUCGgGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 113114 0.76 0.155303
Target:  5'- gGGCCGCGGacgcggacgccgcCGGGCCCGgcuacgcCGACCUCGc -3'
miRNA:   3'- gCCGGCGCC-------------GCUCGGGU-------GCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 119091 0.75 0.16533
Target:  5'- aGGCCGCGGCgcucggcgcguacguGAGCCgCGCGgccgGCCUCGu -3'
miRNA:   3'- gCCGGCGCCG---------------CUCGG-GUGC----UGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 139654 0.75 0.171786
Target:  5'- gGGUCGCGGCGGGCgCGCcGCC-CGAc -3'
miRNA:   3'- gCCGGCGCCGCUCGgGUGcUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 97365 0.75 0.171786
Target:  5'- gCGGCgGCGGCGGGCgCGgcgggggcguCGGCCUCGu -3'
miRNA:   3'- -GCCGgCGCCGCUCGgGU----------GCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 44657 0.75 0.178892
Target:  5'- uGGCCGCGGC-AGCCCgacacaugcgcacgGCGGCCggCGGc -3'
miRNA:   3'- gCCGGCGCCGcUCGGG--------------UGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 57511 0.75 0.180172
Target:  5'- uCGGCCGCGGCGGcggcggccGCCUccggcGCGGCCgCGGg -3'
miRNA:   3'- -GCCGGCGCCGCU--------CGGG-----UGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 124073 0.75 0.180172
Target:  5'- aCGGCCGUGcGCGcGgCCGCGACCgagCGGg -3'
miRNA:   3'- -GCCGGCGC-CGCuCgGGUGCUGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 64384 0.75 0.180172
Target:  5'- aGGCCGUGGCcAGCCCGCGGCg---- -3'
miRNA:   3'- gCCGGCGCCGcUCGGGUGCUGgagcu -5'
29505 3' -63.7 NC_006151.1 + 2279 0.75 0.180172
Target:  5'- aCGGCCgGCGGgGcGCCCGCGGCggCGAc -3'
miRNA:   3'- -GCCGG-CGCCgCuCGGGUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 5876 0.75 0.180172
Target:  5'- gGGCCGCcGgGGGCCC-CGGCCUCu- -3'
miRNA:   3'- gCCGGCGcCgCUCGGGuGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 38391 0.75 0.180172
Target:  5'- cCGGCgGCGGCGGGCgCCcccucCGGCCUCc- -3'
miRNA:   3'- -GCCGgCGCCGCUCG-GGu----GCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 662 0.75 0.180172
Target:  5'- gCGGCCGgGGCGGGCuCCGCGGaucgcaUCGGc -3'
miRNA:   3'- -GCCGGCgCCGCUCG-GGUGCUgg----AGCU- -5'
29505 3' -63.7 NC_006151.1 + 65989 0.75 0.1845
Target:  5'- cCGGCCGCGaGCGcGUCCuccGCGGCgUCGAg -3'
miRNA:   3'- -GCCGGCGC-CGCuCGGG---UGCUGgAGCU- -5'
29505 3' -63.7 NC_006151.1 + 119452 0.74 0.188919
Target:  5'- gGGCCGCGGCGAcguggacgccguGCgCUACGuggccggcaGCCUCGAc -3'
miRNA:   3'- gCCGGCGCCGCU------------CG-GGUGC---------UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 136273 0.74 0.193431
Target:  5'- --cCCGCGGCcGGCCUACGACCUgCGGg -3'
miRNA:   3'- gccGGCGCCGcUCGGGUGCUGGA-GCU- -5'
29505 3' -63.7 NC_006151.1 + 60417 0.74 0.193431
Target:  5'- aCGGCC-CaGCG-GCCCACGuCCUCGGg -3'
miRNA:   3'- -GCCGGcGcCGCuCGGGUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 50331 0.74 0.193431
Target:  5'- aCGGCCGCccGGCGccuGgCCGCGGCCUCc- -3'
miRNA:   3'- -GCCGGCG--CCGCu--CgGGUGCUGGAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.