miRNA display CGI


Results 41 - 60 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 50331 0.74 0.193431
Target:  5'- aCGGCCGCccGGCGccuGgCCGCGGCCUCc- -3'
miRNA:   3'- -GCCGGCG--CCGCu--CgGGUGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 39846 0.74 0.198038
Target:  5'- gCGGCCGcCGGggccucgcCGAGCuCCGCGGCCcCGAg -3'
miRNA:   3'- -GCCGGC-GCC--------GCUCG-GGUGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 102876 0.74 0.198038
Target:  5'- uGGCCaacgccgcgGUGGCGGGCCUGCGccGCCUCGu -3'
miRNA:   3'- gCCGG---------CGCCGCUCGGGUGC--UGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 10912 0.74 0.198038
Target:  5'- gCGGaCCGgGGuCGGGCCCACGGCgC-CGAg -3'
miRNA:   3'- -GCC-GGCgCC-GCUCGGGUGCUG-GaGCU- -5'
29505 3' -63.7 NC_006151.1 + 13181 0.74 0.202265
Target:  5'- -cGCCGCGGCcgucucgGGGCCCGCGGCgccgccaaCUCGAg -3'
miRNA:   3'- gcCGGCGCCG-------CUCGGGUGCUG--------GAGCU- -5'
29505 3' -63.7 NC_006151.1 + 32242 0.74 0.202739
Target:  5'- uGGCCGCGGCGAccGCcgCCGCcGCuCUCGAg -3'
miRNA:   3'- gCCGGCGCCGCU--CG--GGUGcUG-GAGCU- -5'
29505 3' -63.7 NC_006151.1 + 106236 0.74 0.202739
Target:  5'- uGGCCGCGGUG-GCCgGCGAgC-CGAc -3'
miRNA:   3'- gCCGGCGCCGCuCGGgUGCUgGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 123917 0.74 0.202739
Target:  5'- gCGGCCGUGacGCGGGCCgccuCGGCCUCGc -3'
miRNA:   3'- -GCCGGCGC--CGCUCGGgu--GCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 81498 0.74 0.207053
Target:  5'- gCGGCCGuCGGCGAgagcgcgGCCCGCguGAgCUCGGc -3'
miRNA:   3'- -GCCGGC-GCCGCU-------CGGGUG--CUgGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 80695 0.74 0.207537
Target:  5'- gCGGCC-CGGCGcgGGCCuCACGACCUgGc -3'
miRNA:   3'- -GCCGGcGCCGC--UCGG-GUGCUGGAgCu -5'
29505 3' -63.7 NC_006151.1 + 3976 0.74 0.207537
Target:  5'- gCGGCCuCGGCGAGCcggCCGCGGCCaCGu -3'
miRNA:   3'- -GCCGGcGCCGCUCG---GGUGCUGGaGCu -5'
29505 3' -63.7 NC_006151.1 + 130734 0.74 0.212433
Target:  5'- gCGGCCGCGGCGcAGCgCCACccacgacggcauGGCCagGAa -3'
miRNA:   3'- -GCCGGCGCCGC-UCG-GGUG------------CUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 104910 0.73 0.217428
Target:  5'- gCGGCgGCGGCGcGCgaCCGCGAcggggcCCUCGAg -3'
miRNA:   3'- -GCCGgCGCCGCuCG--GGUGCU------GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 105696 0.73 0.222523
Target:  5'- gGGCCGacgcCGGCGcGGCCgCGCG-CCUCGAc -3'
miRNA:   3'- gCCGGC----GCCGC-UCGG-GUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 104860 0.73 0.22772
Target:  5'- aGGCCGCGGCGAcggagcGCgCCACGcGCCUgcugcgCGAg -3'
miRNA:   3'- gCCGGCGCCGCU------CG-GGUGC-UGGA------GCU- -5'
29505 3' -63.7 NC_006151.1 + 106674 0.73 0.228245
Target:  5'- aGGCCGCGGCGcucggcgcgccgggcGCCgGCGACCUg-- -3'
miRNA:   3'- gCCGGCGCCGCu--------------CGGgUGCUGGAgcu -5'
29505 3' -63.7 NC_006151.1 + 106919 0.73 0.233018
Target:  5'- --aCCGCGGCGuGUCCACGgACCUCa- -3'
miRNA:   3'- gccGGCGCCGCuCGGGUGC-UGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 129459 0.73 0.233018
Target:  5'- aCGGCCGUGGgcgggaCGAGCCCGuccaGGuCCUCGGa -3'
miRNA:   3'- -GCCGGCGCC------GCUCGGGUg---CU-GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 37568 0.73 0.233018
Target:  5'- gGGCCGcCGGCGAGgCCAUGuCCUgGc -3'
miRNA:   3'- gCCGGC-GCCGCUCgGGUGCuGGAgCu -5'
29505 3' -63.7 NC_006151.1 + 128537 0.73 0.233018
Target:  5'- aGGCCaCGGCGGGCCCGcCGGCg-CGGu -3'
miRNA:   3'- gCCGGcGCCGCUCGGGU-GCUGgaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.