miRNA display CGI


Results 61 - 80 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 50691 0.73 0.23842
Target:  5'- -cGCCGCGGCaGcGUCCACG-CCUCGGc -3'
miRNA:   3'- gcCGGCGCCG-CuCGGGUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 51214 0.73 0.23842
Target:  5'- aGGCCGCccGCGGGCCCGCGcaggcggcgcgaGCgCUCGGc -3'
miRNA:   3'- gCCGGCGc-CGCUCGGGUGC------------UG-GAGCU- -5'
29505 3' -63.7 NC_006151.1 + 86182 0.73 0.23842
Target:  5'- uGGCCGCcgcgcugcccccGGCGGGCCCGCuGCCcaucaacaUCGAc -3'
miRNA:   3'- gCCGGCG------------CCGCUCGGGUGcUGG--------AGCU- -5'
29505 3' -63.7 NC_006151.1 + 4182 0.73 0.24061
Target:  5'- gCGGCCGUcaccuccucgaggcaGGCGGGCCCgaggGCGGCCggggcgCGGg -3'
miRNA:   3'- -GCCGGCG---------------CCGCUCGGG----UGCUGGa-----GCU- -5'
29505 3' -63.7 NC_006151.1 + 10014 0.73 0.243926
Target:  5'- gCGGCgGCGGCGGuCgCCGCGGCCagGAg -3'
miRNA:   3'- -GCCGgCGCCGCUcG-GGUGCUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 116141 0.73 0.243926
Target:  5'- -aGCCGC-GCGAGCCCGCGAgCUUCa- -3'
miRNA:   3'- gcCGGCGcCGCUCGGGUGCU-GGAGcu -5'
29505 3' -63.7 NC_006151.1 + 25215 0.73 0.243926
Target:  5'- uGGCCuCGGCgGAG-CCGCGACCUCu- -3'
miRNA:   3'- gCCGGcGCCG-CUCgGGUGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 66793 0.72 0.255255
Target:  5'- gCGGCgGCGGCgGGGCCCggggACGACgaCGGc -3'
miRNA:   3'- -GCCGgCGCCG-CUCGGG----UGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 22096 0.72 0.255255
Target:  5'- gGGCCGcCGGUGGG-CCACcGCCUCGu -3'
miRNA:   3'- gCCGGC-GCCGCUCgGGUGcUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 122462 0.72 0.255255
Target:  5'- aCGGCgGCGGCGGGCgCCGaGGCCggggacgCGGg -3'
miRNA:   3'- -GCCGgCGCCGCUCG-GGUgCUGGa------GCU- -5'
29505 3' -63.7 NC_006151.1 + 3270 0.72 0.26108
Target:  5'- gCGGCgCGCGGCGAugugcGCCaggGCGGCCgggUCGAa -3'
miRNA:   3'- -GCCG-GCGCCGCU-----CGGg--UGCUGG---AGCU- -5'
29505 3' -63.7 NC_006151.1 + 99838 0.72 0.265222
Target:  5'- aCGGCCGUGGcCGAcGCCUacaacugccuccugACGGCCUCc- -3'
miRNA:   3'- -GCCGGCGCC-GCU-CGGG--------------UGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 36503 0.72 0.267013
Target:  5'- cCGGU--CGGUGAGCCCgggccggcggcGCGGCCUCGGa -3'
miRNA:   3'- -GCCGgcGCCGCUCGGG-----------UGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 18431 0.72 0.273054
Target:  5'- gGGCCGcCGGCGGgcgucGCCCGCcuCCUCGu -3'
miRNA:   3'- gCCGGC-GCCGCU-----CGGGUGcuGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 102400 0.72 0.273054
Target:  5'- uGGUCGCGGCGcgcGUCgCGCGGCCcgCGAa -3'
miRNA:   3'- gCCGGCGCCGCu--CGG-GUGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 64478 0.72 0.273054
Target:  5'- -cGCCGCGGCGGggacGCCCGCGGgCgCGGg -3'
miRNA:   3'- gcCGGCGCCGCU----CGGGUGCUgGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 128016 0.72 0.278584
Target:  5'- gGGCgGCGGCGAcggcgucugcgacGCCCGCGGCagcggCGGc -3'
miRNA:   3'- gCCGgCGCCGCU-------------CGGGUGCUGga---GCU- -5'
29505 3' -63.7 NC_006151.1 + 53989 0.72 0.278584
Target:  5'- gGGCguCGCGGCGAGCucccggacgcgcuCCACGAUcggCUCGAc -3'
miRNA:   3'- gCCG--GCGCCGCUCG-------------GGUGCUG---GAGCU- -5'
29505 3' -63.7 NC_006151.1 + 91109 0.72 0.279204
Target:  5'- cCGGCCGCGGCGcccuuCgCCACGGCggCGAg -3'
miRNA:   3'- -GCCGGCGCCGCuc---G-GGUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 78415 0.72 0.279204
Target:  5'- gGGCCGCGaGCGccguGGCCCACG-CCgUCa- -3'
miRNA:   3'- gCCGGCGC-CGC----UCGGGUGCuGG-AGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.