miRNA display CGI


Results 81 - 100 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 91109 0.72 0.279204
Target:  5'- cCGGCCGCGGCGcccuuCgCCACGGCggCGAg -3'
miRNA:   3'- -GCCGGCGCCGCuc---G-GGUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 135490 0.72 0.279204
Target:  5'- gGGCCa-GGCG-GCgCGCGGCCUCGGc -3'
miRNA:   3'- gCCGGcgCCGCuCGgGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 134753 0.72 0.285464
Target:  5'- cCGaGCagCGCGcGCgGGGCCCGCGGCUUCGGc -3'
miRNA:   3'- -GC-CG--GCGC-CG-CUCGGGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 50374 0.72 0.285464
Target:  5'- cCGGCgGgGGCGAGacgcgggcCCCGCGGuCCUCGc -3'
miRNA:   3'- -GCCGgCgCCGCUC--------GGGUGCU-GGAGCu -5'
29505 3' -63.7 NC_006151.1 + 121144 0.72 0.285464
Target:  5'- uGGCCGaCGGCGGGCCgCugGugCagaCGGc -3'
miRNA:   3'- gCCGGC-GCCGCUCGG-GugCugGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 107040 0.71 0.291834
Target:  5'- gCGGCCccuggcCGGCGAGCCgGCcuGCCUCGu -3'
miRNA:   3'- -GCCGGc-----GCCGCUCGGgUGc-UGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 37182 0.71 0.291834
Target:  5'- -cGCCGCGGCcccgcGGCCCuCGGCCUCc- -3'
miRNA:   3'- gcCGGCGCCGc----UCGGGuGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 2774 0.71 0.298315
Target:  5'- aCGGCCGCGcG-GAGCUCGCGGCaCcCGGg -3'
miRNA:   3'- -GCCGGCGC-CgCUCGGGUGCUG-GaGCU- -5'
29505 3' -63.7 NC_006151.1 + 29066 0.71 0.304907
Target:  5'- uGGCgGCGccGCGGGCCCcgagACGGCCgcggCGAc -3'
miRNA:   3'- gCCGgCGC--CGCUCGGG----UGCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 135620 0.71 0.304907
Target:  5'- aCGGCCGCGGC--GCCCGCaccACC-CGGa -3'
miRNA:   3'- -GCCGGCGCCGcuCGGGUGc--UGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 61338 0.71 0.304907
Target:  5'- cCGGCCaGCGGCuGcGCaCCACGGCCggGAg -3'
miRNA:   3'- -GCCGG-CGCCG-CuCG-GGUGCUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 113800 0.71 0.304907
Target:  5'- aCGcGCUGCuGCG-GCgCCACGGCCUCGc -3'
miRNA:   3'- -GC-CGGCGcCGCuCG-GGUGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 68293 0.71 0.304907
Target:  5'- aCGGCgGCcaGGCGcgcGCCCACGACggCGAg -3'
miRNA:   3'- -GCCGgCG--CCGCu--CGGGUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 65290 0.71 0.307575
Target:  5'- -uGCCGCccuugacguccagguGGCuGAGCCCGCGGCCgUUGAg -3'
miRNA:   3'- gcCGGCG---------------CCG-CUCGGGUGCUGG-AGCU- -5'
29505 3' -63.7 NC_006151.1 + 3940 0.71 0.31161
Target:  5'- aGGCCGgGcGCGGGCuCCGCgGGCC-CGGg -3'
miRNA:   3'- gCCGGCgC-CGCUCG-GGUG-CUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 20322 0.71 0.31161
Target:  5'- uGGCgGCGGCGAGCaggacgCGCGACa-CGAc -3'
miRNA:   3'- gCCGgCGCCGCUCGg-----GUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 65728 0.71 0.31161
Target:  5'- gCGGCUGCGcGCG-GCCCAggagccgggaGGCCUCGu -3'
miRNA:   3'- -GCCGGCGC-CGCuCGGGUg---------CUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 84428 0.71 0.31161
Target:  5'- gCGGCgCGCGGCG-GCgCGCGGCC-Ca- -3'
miRNA:   3'- -GCCG-GCGCCGCuCGgGUGCUGGaGcu -5'
29505 3' -63.7 NC_006151.1 + 97250 0.71 0.31161
Target:  5'- gCGGCCGCGcaugucGgGGGCCCACacgggcagcGCCUCGGc -3'
miRNA:   3'- -GCCGGCGC------CgCUCGGGUGc--------UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 6289 0.71 0.314322
Target:  5'- uCGGCCGCGGCGgcGGCcgCCAgGAgcuggcugaaguugcCCUCGGu -3'
miRNA:   3'- -GCCGGCGCCGC--UCG--GGUgCU---------------GGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.