miRNA display CGI


Results 101 - 120 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 68873 0.71 0.317737
Target:  5'- aGcGCCGgGGCGcGCCCggccacgucgaggACGGCCUCGc -3'
miRNA:   3'- gC-CGGCgCCGCuCGGG-------------UGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 134479 0.71 0.318424
Target:  5'- aCGGCCGCcacUGGGCCUACGuCUUCGGg -3'
miRNA:   3'- -GCCGGCGcc-GCUCGGGUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 82135 0.71 0.318424
Target:  5'- gCGGcCCGCGGgCGGGCCCGgCGGCUcCa- -3'
miRNA:   3'- -GCC-GGCGCC-GCUCGGGU-GCUGGaGcu -5'
29505 3' -63.7 NC_006151.1 + 5335 0.71 0.318424
Target:  5'- gCGGCCGCGGCGGagggcGCCCucucCGGCg-CGGc -3'
miRNA:   3'- -GCCGGCGCCGCU-----CGGGu---GCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 36128 0.71 0.321181
Target:  5'- gCGGCCGCGGCcgGAGCC-ACGAggccgccccguccucCUUCGGc -3'
miRNA:   3'- -GCCGGCGCCG--CUCGGgUGCU---------------GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 72341 0.71 0.32326
Target:  5'- uGGCCGCGaGCacgucgccgccgcaGGGCagCGCGACCUCGc -3'
miRNA:   3'- gCCGGCGC-CG--------------CUCGg-GUGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 133383 0.71 0.32535
Target:  5'- gCGGCCGgGGCGGcGgCCGgGGCCgagCGGg -3'
miRNA:   3'- -GCCGGCgCCGCU-CgGGUgCUGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 114242 0.71 0.32535
Target:  5'- uGGCCGC-GCGGGaCCCcucggagcGCGcCCUCGAg -3'
miRNA:   3'- gCCGGCGcCGCUC-GGG--------UGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 32784 0.7 0.332387
Target:  5'- gCGGCCGCGGgGGGCCgaaGCGGacgCGGa -3'
miRNA:   3'- -GCCGGCGCCgCUCGGg--UGCUggaGCU- -5'
29505 3' -63.7 NC_006151.1 + 131733 0.7 0.338815
Target:  5'- aGGCgggGUGGCGGGCCCgggcgagGCGACCgucgCGGu -3'
miRNA:   3'- gCCGg--CGCCGCUCGGG-------UGCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 79771 0.7 0.339535
Target:  5'- cCGGuCCaCGGCG-GCCggauCGCGGCCUCGGc -3'
miRNA:   3'- -GCC-GGcGCCGCuCGG----GUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 81907 0.7 0.346794
Target:  5'- cCGGUCGCGGCGcGCC----GCCUCGGa -3'
miRNA:   3'- -GCCGGCGCCGCuCGGgugcUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 128758 0.7 0.346794
Target:  5'- gCGGgCGCauguaguaGGCGuaccGCuCCACGGCCUCGGu -3'
miRNA:   3'- -GCCgGCG--------CCGCu---CG-GGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 77922 0.7 0.346794
Target:  5'- aCGGCCGUgguggugaagGGCGGGCgCGCGGCCc--- -3'
miRNA:   3'- -GCCGGCG----------CCGCUCGgGUGCUGGagcu -5'
29505 3' -63.7 NC_006151.1 + 4401 0.7 0.346794
Target:  5'- gGGuCCGCGGCGcGGCCCGgguaGGCCaugUCGGc -3'
miRNA:   3'- gCC-GGCGCCGC-UCGGGUg---CUGG---AGCU- -5'
29505 3' -63.7 NC_006151.1 + 84818 0.7 0.346794
Target:  5'- gCGGCCGCGGaCGGGgCCGCGaggugcagaucGCCaaGAa -3'
miRNA:   3'- -GCCGGCGCC-GCUCgGGUGC-----------UGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 71715 0.7 0.354163
Target:  5'- aGGCCGaGGCGAuccagGCCUccaGCG-CCUCGAa -3'
miRNA:   3'- gCCGGCgCCGCU-----CGGG---UGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 81534 0.7 0.354163
Target:  5'- gCGGCCGCGGCGGcgcGCuCCGCGgugcacaugGCCguggugCGGa -3'
miRNA:   3'- -GCCGGCGCCGCU---CG-GGUGC---------UGGa-----GCU- -5'
29505 3' -63.7 NC_006151.1 + 6228 0.7 0.354163
Target:  5'- gGaGCCGCGGCgccggGAGCCCugGcugccGCCgUCGGg -3'
miRNA:   3'- gC-CGGCGCCG-----CUCGGGugC-----UGG-AGCU- -5'
29505 3' -63.7 NC_006151.1 + 122789 0.7 0.354163
Target:  5'- gCGGCugCGCGGCcucGCCCgACGagcGCCUCGAg -3'
miRNA:   3'- -GCCG--GCGCCGcu-CGGG-UGC---UGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.