miRNA display CGI


Results 21 - 40 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 59614 0.66 0.589021
Target:  5'- aCGGCCccggaGGCGuaguGCCCguacACGGCCcCGAa -3'
miRNA:   3'- -GCCGGcg---CCGCu---CGGG----UGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 49033 0.66 0.589021
Target:  5'- gGGCCG-GGCcaGGCCCACGGgCUgGc -3'
miRNA:   3'- gCCGGCgCCGc-UCGGGUGCUgGAgCu -5'
29505 3' -63.7 NC_006151.1 + 21507 0.66 0.589021
Target:  5'- gCGGgcgucaCCGgGGCGGGCUCG-GGCUUCGGc -3'
miRNA:   3'- -GCC------GGCgCCGCUCGGGUgCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 5246 0.66 0.589021
Target:  5'- gCGGCgGCGGCGggGGCCCgggggGCGGagggCGAg -3'
miRNA:   3'- -GCCGgCGCCGC--UCGGG-----UGCUgga-GCU- -5'
29505 3' -63.7 NC_006151.1 + 121051 0.66 0.589021
Target:  5'- uGGCCugcccGCGcGUGGGCuUCACGugCUCGc -3'
miRNA:   3'- gCCGG-----CGC-CGCUCG-GGUGCugGAGCu -5'
29505 3' -63.7 NC_006151.1 + 125237 0.66 0.589021
Target:  5'- nGGCC-CGGCGcuCCCcCGGCC-CGGc -3'
miRNA:   3'- gCCGGcGCCGCucGGGuGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 9695 0.66 0.589021
Target:  5'- cCGGCCGCGG-GuGCCCGgGAgaCgggagCGAa -3'
miRNA:   3'- -GCCGGCGCCgCuCGGGUgCUg-Ga----GCU- -5'
29505 3' -63.7 NC_006151.1 + 139917 0.66 0.589021
Target:  5'- cCGcGCCGCGGgcucgucgccgUGGGCCgC-CGuCCUCGAg -3'
miRNA:   3'- -GC-CGGCGCC-----------GCUCGG-GuGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 133671 0.66 0.589021
Target:  5'- cCGGCgCgGCGGCGcGCCCccgagGCGGUCUCGu -3'
miRNA:   3'- -GCCG-G-CGCCGCuCGGG-----UGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 52859 0.66 0.589021
Target:  5'- gCGGCUGCuGCGuGGCCuCGCGguACCggUCGAa -3'
miRNA:   3'- -GCCGGCGcCGC-UCGG-GUGC--UGG--AGCU- -5'
29505 3' -63.7 NC_006151.1 + 39155 0.66 0.589021
Target:  5'- cCGcGCCGCGGCG-GCCUcuCGGCgcugCUCGc -3'
miRNA:   3'- -GC-CGGCGCCGCuCGGGu-GCUG----GAGCu -5'
29505 3' -63.7 NC_006151.1 + 38780 0.66 0.589021
Target:  5'- cCGGCUcCGGCGcccgcucgGGCCCAUG-CC-CGAg -3'
miRNA:   3'- -GCCGGcGCCGC--------UCGGGUGCuGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 7758 0.66 0.589021
Target:  5'- -cGCCGgGGCGGGagaaCCGgaccCGAaCCUCGAg -3'
miRNA:   3'- gcCGGCgCCGCUCg---GGU----GCU-GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 133459 0.66 0.589021
Target:  5'- uGGCCcCGGuCGAgGCCCgcgagGCGGCCgCGGg -3'
miRNA:   3'- gCCGGcGCC-GCU-CGGG-----UGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 63481 0.66 0.58806
Target:  5'- gGGCgGCGGCGGcGCCCGaagaaggUGGCCa--- -3'
miRNA:   3'- gCCGgCGCCGCU-CGGGU-------GCUGGagcu -5'
29505 3' -63.7 NC_006151.1 + 24634 0.66 0.58806
Target:  5'- aGGUa--GGCGAGCCCGCGgagcacgGCC-CGGa -3'
miRNA:   3'- gCCGgcgCCGCUCGGGUGC-------UGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 68661 0.66 0.579427
Target:  5'- aCGGCCgGCGG--GGCCCGCGucacccuuauaACCUCc- -3'
miRNA:   3'- -GCCGG-CGCCgcUCGGGUGC-----------UGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 20220 0.66 0.579427
Target:  5'- gGGCCGCgcaGGCGAccccGCCCAagaaGAUCagGAg -3'
miRNA:   3'- gCCGGCG---CCGCU----CGGGUg---CUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 141394 0.66 0.579427
Target:  5'- gGGCaaacaGCGGCGuGUCCGgCGAUCggugCGGg -3'
miRNA:   3'- gCCGg----CGCCGCuCGGGU-GCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 124674 0.66 0.579427
Target:  5'- aCGGCCugcGCGaGgGGGCCCACGgggaGCacaUCGGc -3'
miRNA:   3'- -GCCGG---CGC-CgCUCGGGUGC----UGg--AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.