Results 41 - 60 of 385 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 99362 | 0.66 | 0.579427 |
Target: 5'- gCGGUCGuCGGCGGcgucguGCaCCGCcuCCUCGAc -3' miRNA: 3'- -GCCGGC-GCCGCU------CG-GGUGcuGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 101534 | 0.66 | 0.579427 |
Target: 5'- aGGCCuucGUGGCGcGCCUGCGcCCggCGGa -3' miRNA: 3'- gCCGG---CGCCGCuCGGGUGCuGGa-GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 124674 | 0.66 | 0.579427 |
Target: 5'- aCGGCCugcGCGaGgGGGCCCACGgggaGCacaUCGGc -3' miRNA: 3'- -GCCGG---CGC-CgCUCGGGUGC----UGg--AGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 141394 | 0.66 | 0.579427 |
Target: 5'- gGGCaaacaGCGGCGuGUCCGgCGAUCggugCGGg -3' miRNA: 3'- gCCGg----CGCCGCuCGGGU-GCUGGa---GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 20220 | 0.66 | 0.579427 |
Target: 5'- gGGCCGCgcaGGCGAccccGCCCAagaaGAUCagGAg -3' miRNA: 3'- gCCGGCG---CCGCU----CGGGUg---CUGGagCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 68661 | 0.66 | 0.579427 |
Target: 5'- aCGGCCgGCGG--GGCCCGCGucacccuuauaACCUCc- -3' miRNA: 3'- -GCCGG-CGCCgcUCGGGUGC-----------UGGAGcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 89616 | 0.66 | 0.579427 |
Target: 5'- uGGCCGCGaggaugaggaGCGuGUgCGCGcCCUUGAc -3' miRNA: 3'- gCCGGCGC----------CGCuCGgGUGCuGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 78663 | 0.66 | 0.57847 |
Target: 5'- gCGGCCGgGGCGcgggugcuggacgGGCuCUACGccggccgggGCCUCGu -3' miRNA: 3'- -GCCGGCgCCGC-------------UCG-GGUGC---------UGGAGCu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 121371 | 0.66 | 0.57847 |
Target: 5'- gCGGaCgGCGGCGAggagaccGCCUuCGACUUUGGg -3' miRNA: 3'- -GCC-GgCGCCGCU-------CGGGuGCUGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 58749 | 0.66 | 0.569867 |
Target: 5'- aGcGCCGCGGCca--CCGCGGCCgcCGAg -3' miRNA: 3'- gC-CGGCGCCGcucgGGUGCUGGa-GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 68073 | 0.66 | 0.569867 |
Target: 5'- gGGCagGuCGGCGGGCa-GCG-CCUCGAg -3' miRNA: 3'- gCCGg-C-GCCGCUCGggUGCuGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 86260 | 0.66 | 0.569867 |
Target: 5'- uGGCCGUGGuCGAcGacgaCCGCGGCCccuucuuccUCGGc -3' miRNA: 3'- gCCGGCGCC-GCU-Cg---GGUGCUGG---------AGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 125208 | 0.66 | 0.569867 |
Target: 5'- gGGCCccGCGGCc--CCCGCGGCCgcccgUCGGg -3' miRNA: 3'- gCCGG--CGCCGcucGGGUGCUGG-----AGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 9041 | 0.66 | 0.569867 |
Target: 5'- -cGCCGgGGCGc-CCCGCGugCUCc- -3' miRNA: 3'- gcCGGCgCCGCucGGGUGCugGAGcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 52462 | 0.66 | 0.569867 |
Target: 5'- aCGGCgGCcaGGCGccgguaGGCCgCcgugACGGCCUCGGg -3' miRNA: 3'- -GCCGgCG--CCGC------UCGG-G----UGCUGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 130625 | 0.66 | 0.569867 |
Target: 5'- uGGUCGCGGCucacGAGCgCCGCcgaGGCCgccugCGGc -3' miRNA: 3'- gCCGGCGCCG----CUCG-GGUG---CUGGa----GCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 132043 | 0.66 | 0.569867 |
Target: 5'- gCGGCgCGCGGC-AGCgCgGCGGagaacggcggcuCCUCGAc -3' miRNA: 3'- -GCCG-GCGCCGcUCG-GgUGCU------------GGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 114920 | 0.66 | 0.569867 |
Target: 5'- aCGGCCcCGGCGucGCgCuCGGCCUCc- -3' miRNA: 3'- -GCCGGcGCCGCu-CGgGuGCUGGAGcu -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 69460 | 0.66 | 0.568913 |
Target: 5'- gCGcGCCGCgGGCGccGGCaccgucgCCGCcGCCUCGAg -3' miRNA: 3'- -GC-CGGCG-CCGC--UCG-------GGUGcUGGAGCU- -5' |
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29505 | 3' | -63.7 | NC_006151.1 | + | 54125 | 0.66 | 0.568913 |
Target: 5'- gCGGCUGCGGaCGGGCUCugccccgGCGGCgCcgCGGa -3' miRNA: 3'- -GCCGGCGCC-GCUCGGG-------UGCUG-Ga-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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