miRNA display CGI


Results 61 - 80 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 98458 0.66 0.568913
Target:  5'- cCGGCCuggcgcuGUGGCGccuGCgCCACGACUgggaCGAg -3'
miRNA:   3'- -GCCGG-------CGCCGCu--CG-GGUGCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 139094 0.66 0.560346
Target:  5'- gGGCgCGCauGGCGcuGUUCACGACCcUCGGc -3'
miRNA:   3'- gCCG-GCG--CCGCu-CGGGUGCUGG-AGCU- -5'
29505 3' -63.7 NC_006151.1 + 111289 0.66 0.560346
Target:  5'- gGGUaCGCGGCcuGGCCCACGAacgCGGc -3'
miRNA:   3'- gCCG-GCGCCGc-UCGGGUGCUggaGCU- -5'
29505 3' -63.7 NC_006151.1 + 38572 0.66 0.560346
Target:  5'- aGcGCCGCGcGCccgGGGCCCGCcGCCcCGGg -3'
miRNA:   3'- gC-CGGCGC-CG---CUCGGGUGcUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 4348 0.66 0.560346
Target:  5'- aGGCgGCGcggacGCGGGCgCAgagGGCCUCGAc -3'
miRNA:   3'- gCCGgCGC-----CGCUCGgGUg--CUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 89129 0.66 0.560346
Target:  5'- gGGCgGCGGgaccgggggcguCGAGaCCGCGcccGCCUCGGg -3'
miRNA:   3'- gCCGgCGCC------------GCUCgGGUGC---UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 58423 0.66 0.560346
Target:  5'- gGGCgUGCGGC-AG-CCACG-CCUCGGu -3'
miRNA:   3'- gCCG-GCGCCGcUCgGGUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 3641 0.66 0.560346
Target:  5'- gGGCCGCGccggaGAGCCCcuCGuccuCCUCGc -3'
miRNA:   3'- gCCGGCGCcg---CUCGGGu-GCu---GGAGCu -5'
29505 3' -63.7 NC_006151.1 + 59290 0.66 0.560346
Target:  5'- aCGaG-CGCGGCGuggcGCCCGCGGCUcagCGGg -3'
miRNA:   3'- -GC-CgGCGCCGCu---CGGGUGCUGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 59933 0.66 0.560346
Target:  5'- gCGcGCCgucaGCGGCG-GCUCGCaGcCCUCGAg -3'
miRNA:   3'- -GC-CGG----CGCCGCuCGGGUG-CuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 78785 0.66 0.560346
Target:  5'- -cGCCuuCGGCGAcucGCCCGCGGCCcuccgCGGg -3'
miRNA:   3'- gcCGGc-GCCGCU---CGGGUGCUGGa----GCU- -5'
29505 3' -63.7 NC_006151.1 + 108750 0.66 0.560346
Target:  5'- cCGGCUGCGgauGCGAGCCguggagauCaACCUCGGg -3'
miRNA:   3'- -GCCGGCGC---CGCUCGGgu------GcUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 84358 0.66 0.560346
Target:  5'- cCGGcCCGCGGCG-GUgaUCGCGAUCgCGGc -3'
miRNA:   3'- -GCC-GGCGCCGCuCG--GGUGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 39345 0.66 0.560346
Target:  5'- uCGGCgcggCGCGGCGccGGCUCAuCGugCUgGAc -3'
miRNA:   3'- -GCCG----GCGCCGC--UCGGGU-GCugGAgCU- -5'
29505 3' -63.7 NC_006151.1 + 96325 0.66 0.560346
Target:  5'- aGGCCGCGcGCguaGAGCgCCGgguaGGCCUCc- -3'
miRNA:   3'- gCCGGCGC-CG---CUCG-GGUg---CUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 65124 0.66 0.560346
Target:  5'- aCGcCCGuCGGCGGGCuCCGCG-CCagCGAc -3'
miRNA:   3'- -GCcGGC-GCCGCUCG-GGUGCuGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 125156 0.66 0.559396
Target:  5'- uGGCgcagcuguaCGCGcGCGAGCUCGagcgccuCGGCCUCGc -3'
miRNA:   3'- gCCG---------GCGC-CGCUCGGGU-------GCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 76338 0.66 0.559396
Target:  5'- uCGGCCGgGuGCG-GCCCgucgcgcGCGAUCaUCGGc -3'
miRNA:   3'- -GCCGGCgC-CGCuCGGG-------UGCUGG-AGCU- -5'
29505 3' -63.7 NC_006151.1 + 73398 0.66 0.559396
Target:  5'- gCGGCCGCcGCGuacgcggccgugaAGCCCACGcCCa--- -3'
miRNA:   3'- -GCCGGCGcCGC-------------UCGGGUGCuGGagcu -5'
29505 3' -63.7 NC_006151.1 + 76222 0.66 0.559396
Target:  5'- gCGuGCCGUcgaGGUucucgcccgagauGAGCCCGagGGCCUCGAc -3'
miRNA:   3'- -GC-CGGCG---CCG-------------CUCGGGUg-CUGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.