miRNA display CGI


Results 81 - 100 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 66592 0.66 0.558447
Target:  5'- gCGGCCGaGGCGcucgacuucgccGCCUACGACggCGAg -3'
miRNA:   3'- -GCCGGCgCCGCu-----------CGGGUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 59354 0.66 0.550869
Target:  5'- gGGCCGCGcGCacgGGGCgCCgcGCGGCCgUCGu -3'
miRNA:   3'- gCCGGCGC-CG---CUCG-GG--UGCUGG-AGCu -5'
29505 3' -63.7 NC_006151.1 + 62113 0.66 0.550869
Target:  5'- gCGGCCGUGGuCGGGCUgAUG--CUCGGc -3'
miRNA:   3'- -GCCGGCGCC-GCUCGGgUGCugGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 101903 0.66 0.550869
Target:  5'- gCGGCCgagcaugcccaaGCGGCGccGGCCCccgUGGCCggCGAg -3'
miRNA:   3'- -GCCGG------------CGCCGC--UCGGGu--GCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 10281 0.66 0.550869
Target:  5'- cCGGCUcccagGCGGCGGGCacgucCCGCGuCCcCGGc -3'
miRNA:   3'- -GCCGG-----CGCCGCUCG-----GGUGCuGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 36745 0.66 0.550869
Target:  5'- uCGGCCGCuuGGCgcccgGAGCCC-CGucuCCUCc- -3'
miRNA:   3'- -GCCGGCG--CCG-----CUCGGGuGCu--GGAGcu -5'
29505 3' -63.7 NC_006151.1 + 50115 0.66 0.550869
Target:  5'- cCGGuCCGCGGUGcgcGCCCgACGcCCacgCGAg -3'
miRNA:   3'- -GCC-GGCGCCGCu--CGGG-UGCuGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 138338 0.66 0.550869
Target:  5'- cCGGCaCGCGcGC-AGCCCGcCGGCC-CGc -3'
miRNA:   3'- -GCCG-GCGC-CGcUCGGGU-GCUGGaGCu -5'
29505 3' -63.7 NC_006151.1 + 70672 0.66 0.549924
Target:  5'- gCGcGCCGcCGGCGAGCgcuuccugcucuaCCGCcccuCCUCGGu -3'
miRNA:   3'- -GC-CGGC-GCCGCUCG-------------GGUGcu--GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 56934 0.67 0.541442
Target:  5'- uGGCgGCGGgGcgucGCCgGCGcucagcGCCUCGAg -3'
miRNA:   3'- gCCGgCGCCgCu---CGGgUGC------UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 31764 0.67 0.541442
Target:  5'- -uGCgGCGGCGGGCgCGCG-CCgggCGGc -3'
miRNA:   3'- gcCGgCGCCGCUCGgGUGCuGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 52774 0.67 0.541442
Target:  5'- aGcGCCGCGGCGuccuGgUCGCGGCuCUgCGAg -3'
miRNA:   3'- gC-CGGCGCCGCu---CgGGUGCUG-GA-GCU- -5'
29505 3' -63.7 NC_006151.1 + 129866 0.67 0.541442
Target:  5'- aGGcCCGUGGCGucgcGCgCCGCcgccACCUCGGu -3'
miRNA:   3'- gCC-GGCGCCGCu---CG-GGUGc---UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 57977 0.67 0.541442
Target:  5'- cCGGUgGgCGGCGAGCgcgCCGCGgaccGCCUCc- -3'
miRNA:   3'- -GCCGgC-GCCGCUCG---GGUGC----UGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 91742 0.67 0.541442
Target:  5'- --aUCGCGGCGGGCgaGCGGgCUCGGg -3'
miRNA:   3'- gccGGCGCCGCUCGggUGCUgGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 114025 0.67 0.541442
Target:  5'- aCGGCCcCcGUGAcgcuGCCCuuCGACCUCGGc -3'
miRNA:   3'- -GCCGGcGcCGCU----CGGGu-GCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 103851 0.67 0.540503
Target:  5'- gCGGCUGCGcGCGcAGCCCgACGaggggacGCUggUCGAg -3'
miRNA:   3'- -GCCGGCGC-CGC-UCGGG-UGC-------UGG--AGCU- -5'
29505 3' -63.7 NC_006151.1 + 77531 0.67 0.538625
Target:  5'- uCGGCCGCGcGUGGGCCgCcccgcaggggagcgACGACgUCu- -3'
miRNA:   3'- -GCCGGCGC-CGCUCGG-G--------------UGCUGgAGcu -5'
29505 3' -63.7 NC_006151.1 + 116204 0.67 0.538625
Target:  5'- uGGCgCGCgcgagcgugauguuGGCGAGCcgcgCCACGGCCgagagcUCGAg -3'
miRNA:   3'- gCCG-GCG--------------CCGCUCG----GGUGCUGG------AGCU- -5'
29505 3' -63.7 NC_006151.1 + 122141 0.67 0.53207
Target:  5'- uCGGCCGUGGaCGAGUUccucgcgcgCACGAUCggCGGc -3'
miRNA:   3'- -GCCGGCGCC-GCUCGG---------GUGCUGGa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.