miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 662 0.75 0.180172
Target:  5'- gCGGCCGgGGCGGGCuCCGCGGaucgcaUCGGc -3'
miRNA:   3'- -GCCGGCgCCGCUCG-GGUGCUgg----AGCU- -5'
29505 3' -63.7 NC_006151.1 + 2111 0.66 0.598643
Target:  5'- gGGCCGCGGgGccGGCCguCGccGCCgCGGa -3'
miRNA:   3'- gCCGGCGCCgC--UCGGguGC--UGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 2279 0.75 0.180172
Target:  5'- aCGGCCgGCGGgGcGCCCGCGGCggCGAc -3'
miRNA:   3'- -GCCGG-CGCCgCuCGGGUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 2402 0.69 0.383946
Target:  5'- gGGCCGCggagcucGGCGAgGCCCcgGCGGCCgcaGGa -3'
miRNA:   3'- gCCGGCG-------CCGCU-CGGG--UGCUGGag-CU- -5'
29505 3' -63.7 NC_006151.1 + 2601 0.67 0.494306
Target:  5'- aGGCgCGCGGCGgcagcgggaccggGGUCCGgGGCC-CGGc -3'
miRNA:   3'- gCCG-GCGCCGC-------------UCGGGUgCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 2774 0.71 0.298315
Target:  5'- aCGGCCGCGcG-GAGCUCGCGGCaCcCGGg -3'
miRNA:   3'- -GCCGGCGC-CgCUCGGGUGCUG-GaGCU- -5'
29505 3' -63.7 NC_006151.1 + 2867 0.67 0.495213
Target:  5'- aCGGCCG-GGCc-GUCCGCGGgccaguCCUCGAu -3'
miRNA:   3'- -GCCGGCgCCGcuCGGGUGCU------GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 3134 0.69 0.425317
Target:  5'- cCGGgCGCGGgGcGCCCucgGCGGgCUCGGc -3'
miRNA:   3'- -GCCgGCGCCgCuCGGG---UGCUgGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 3270 0.72 0.26108
Target:  5'- gCGGCgCGCGGCGAugugcGCCaggGCGGCCgggUCGAa -3'
miRNA:   3'- -GCCG-GCGCCGCU-----CGGg--UGCUGG---AGCU- -5'
29505 3' -63.7 NC_006151.1 + 3405 0.68 0.433737
Target:  5'- gGGCCGCGGCGugugGGUCuCGcCGGCCggGAc -3'
miRNA:   3'- gCCGGCGCCGC----UCGG-GU-GCUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 3641 0.66 0.560346
Target:  5'- gGGCCGCGccggaGAGCCCcuCGuccuCCUCGc -3'
miRNA:   3'- gCCGGCGCcg---CUCGGGu-GCu---GGAGCu -5'
29505 3' -63.7 NC_006151.1 + 3940 0.71 0.31161
Target:  5'- aGGCCGgGcGCGGGCuCCGCgGGCC-CGGg -3'
miRNA:   3'- gCCGGCgC-CGCUCG-GGUG-CUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 3976 0.74 0.207537
Target:  5'- gCGGCCuCGGCGAGCcggCCGCGGCCaCGu -3'
miRNA:   3'- -GCCGGcGCCGCUCG---GGUGCUGGaGCu -5'
29505 3' -63.7 NC_006151.1 + 4021 0.82 0.059034
Target:  5'- gGGCCGCGGCGuaGGUCCagGCGGCCUCGc -3'
miRNA:   3'- gCCGGCGCCGC--UCGGG--UGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 4182 0.73 0.24061
Target:  5'- gCGGCCGUcaccuccucgaggcaGGCGGGCCCgaggGCGGCCggggcgCGGg -3'
miRNA:   3'- -GCCGGCG---------------CCGCUCGGG----UGCUGGa-----GCU- -5'
29505 3' -63.7 NC_006151.1 + 4319 0.69 0.416997
Target:  5'- gGGCaCGCGGcCGGGCUgCGCGGCggCGAa -3'
miRNA:   3'- gCCG-GCGCC-GCUCGG-GUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 4348 0.66 0.560346
Target:  5'- aGGCgGCGcggacGCGGGCgCAgagGGCCUCGAc -3'
miRNA:   3'- gCCGgCGC-----CGCUCGgGUg--CUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 4401 0.7 0.346794
Target:  5'- gGGuCCGCGGCGcGGCCCGgguaGGCCaugUCGGc -3'
miRNA:   3'- gCC-GGCGCCGC-UCGGGUg---CUGG---AGCU- -5'
29505 3' -63.7 NC_006151.1 + 4567 0.67 0.53207
Target:  5'- gCGGCaGCGGCGGGgUCACGcuGCCggUGAu -3'
miRNA:   3'- -GCCGgCGCCGCUCgGGUGC--UGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 4791 0.78 0.105159
Target:  5'- cCGGCCGCGGCGcgguagcGGgCCGCGGCCUggCGGa -3'
miRNA:   3'- -GCCGGCGCCGC-------UCgGGUGCUGGA--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.