miRNA display CGI


Results 41 - 60 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 11245 0.67 0.513506
Target:  5'- gGGCCGCGGCGGcGaCCCcCuuCCUCc- -3'
miRNA:   3'- gCCGGCGCCGCU-C-GGGuGcuGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 11824 0.68 0.45956
Target:  5'- gGGCgGCGGCGGcucGCCCucCGuCCUCc- -3'
miRNA:   3'- gCCGgCGCCGCU---CGGGu-GCuGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 13108 0.76 0.145123
Target:  5'- aGGUCGCGGCGGGucacgcgcgcuCCCGCGACUUCc- -3'
miRNA:   3'- gCCGGCGCCGCUC-----------GGGUGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 13181 0.74 0.202265
Target:  5'- -cGCCGCGGCcgucucgGGGCCCGCGGCgccgccaaCUCGAg -3'
miRNA:   3'- gcCGGCGCCG-------CUCGGGUGCUG--------GAGCU- -5'
29505 3' -63.7 NC_006151.1 + 13967 0.66 0.598643
Target:  5'- cCGGCCaUGGgggagcCGGGCCCGCGuCCcCGGg -3'
miRNA:   3'- -GCCGGcGCC------GCUCGGGUGCuGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 14012 0.69 0.400657
Target:  5'- aGGCCcCGGCcaauGGGCCCGuCGGCC-CGGc -3'
miRNA:   3'- gCCGGcGCCG----CUCGGGU-GCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 14064 0.66 0.579427
Target:  5'- gGGUgCGUGGCGgcccGGCCgACGGCaCUCGc -3'
miRNA:   3'- gCCG-GCGCCGC----UCGGgUGCUG-GAGCu -5'
29505 3' -63.7 NC_006151.1 + 18431 0.72 0.273054
Target:  5'- gGGCCGcCGGCGGgcgucGCCCGCcuCCUCGu -3'
miRNA:   3'- gCCGGC-GCCGCU-----CGGGUGcuGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 19270 0.67 0.495213
Target:  5'- gGGCuCGUGGCGcgcggGGCCCACcggGGCCagCGGc -3'
miRNA:   3'- gCCG-GCGCCGC-----UCGGGUG---CUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 19784 0.68 0.442252
Target:  5'- cCGGCCuCGGUGgagaGGuCCCA-GACCUCGGc -3'
miRNA:   3'- -GCCGGcGCCGC----UC-GGGUgCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 19848 0.69 0.425317
Target:  5'- gGGUCGUcucGGCGgagaGGCUCGgGGCCUCGGu -3'
miRNA:   3'- gCCGGCG---CCGC----UCGGGUgCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 20220 0.66 0.579427
Target:  5'- gGGCCGCgcaGGCGAccccGCCCAagaaGAUCagGAg -3'
miRNA:   3'- gCCGGCG---CCGCU----CGGGUg---CUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 20322 0.71 0.31161
Target:  5'- uGGCgGCGGCGAGCaggacgCGCGACa-CGAc -3'
miRNA:   3'- gCCGgCGCCGCUCGg-----GUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 21331 0.69 0.425317
Target:  5'- cCGG-CGCGGCGggGGUCCGCGGCUggaaCGGc -3'
miRNA:   3'- -GCCgGCGCCGC--UCGGGUGCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 21368 0.68 0.477222
Target:  5'- gGGCUGCGGCcacccgcuGGGCaCgACGGCCggCGGg -3'
miRNA:   3'- gCCGGCGCCG--------CUCG-GgUGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 21437 0.67 0.504324
Target:  5'- gGGUCGCGGCGugggguGGCCCcCGGCggCGu -3'
miRNA:   3'- gCCGGCGCCGC------UCGGGuGCUGgaGCu -5'
29505 3' -63.7 NC_006151.1 + 21507 0.66 0.589021
Target:  5'- gCGGgcgucaCCGgGGCGGGCUCG-GGCUUCGGc -3'
miRNA:   3'- -GCC------GGCgCCGCUCGGGUgCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 21542 0.79 0.090757
Target:  5'- gGGCCGgGGcCGGGgCCugGGCCUCGGc -3'
miRNA:   3'- gCCGGCgCC-GCUCgGGugCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 21610 0.69 0.392642
Target:  5'- uGGCgGCGGCGuaGGCCCGCGggaGCgUCc- -3'
miRNA:   3'- gCCGgCGCCGC--UCGGGUGC---UGgAGcu -5'
29505 3' -63.7 NC_006151.1 + 22096 0.72 0.255255
Target:  5'- gGGCCGcCGGUGGG-CCACcGCCUCGu -3'
miRNA:   3'- gCCGGC-GCCGCUCgGGUGcUGGAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.