miRNA display CGI


Results 61 - 80 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 23050 1.08 0.000794
Target:  5'- gCGGCCGCGGCGAGCCCACGACCUCGAu -3'
miRNA:   3'- -GCCGGCGCCGCUCGGGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 23154 0.87 0.026572
Target:  5'- uCGGCgggaGCGGCgggaGAGCCCACGACCUCGAu -3'
miRNA:   3'- -GCCGg---CGCCG----CUCGGGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 24239 0.68 0.442252
Target:  5'- aCGGCUgGCGGUGGGUCCcgGCGuACCggaCGAa -3'
miRNA:   3'- -GCCGG-CGCCGCUCGGG--UGC-UGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 24456 0.69 0.408776
Target:  5'- gCGGUCGCGcGCGAGCaCCuCGGgggcguuggUCUCGAu -3'
miRNA:   3'- -GCCGGCGC-CGCUCG-GGuGCU---------GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 24634 0.66 0.58806
Target:  5'- aGGUa--GGCGAGCCCGCGgagcacgGCC-CGGa -3'
miRNA:   3'- gCCGgcgCCGCUCGGGUGC-------UGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 25215 0.73 0.243926
Target:  5'- uGGCCuCGGCgGAG-CCGCGACCUCu- -3'
miRNA:   3'- gCCGGcGCCG-CUCgGGUGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 25385 0.67 0.504324
Target:  5'- aCGGCgGCGGUG-GUUCuCGACCgCGAc -3'
miRNA:   3'- -GCCGgCGCCGCuCGGGuGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 26352 0.67 0.522756
Target:  5'- gGGCgGCGGCGGGCCgcgucggggcgCGCGuCCccCGGc -3'
miRNA:   3'- gCCGgCGCCGCUCGG-----------GUGCuGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 28126 0.67 0.486178
Target:  5'- uCGGCuCGgGGCGcGCuCCGCG-CCUCu- -3'
miRNA:   3'- -GCCG-GCgCCGCuCG-GGUGCuGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 28236 0.67 0.512585
Target:  5'- gGGCCG-GGCcgacGGGCCCAUuggccggGGCCUCa- -3'
miRNA:   3'- gCCGGCgCCG----CUCGGGUG-------CUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 29066 0.71 0.304907
Target:  5'- uGGCgGCGccGCGGGCCCcgagACGGCCgcggCGAc -3'
miRNA:   3'- gCCGgCGC--CGCUCGGG----UGCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 29140 0.66 0.579427
Target:  5'- -aGUCGCGG-GAGCgcgcgugacccgCCGCGACCUCu- -3'
miRNA:   3'- gcCGGCGCCgCUCG------------GGUGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 29967 0.83 0.04936
Target:  5'- uCGGaCCGCGGCGAuggugaauggGCCCGCGGCCUgGAc -3'
miRNA:   3'- -GCC-GGCGCCGCU----------CGGGUGCUGGAgCU- -5'
29505 3' -63.7 NC_006151.1 + 30340 0.67 0.494306
Target:  5'- gCGGCgGCGGCGcGagggcgcgaaaacCCCgACGcGCCUCGAu -3'
miRNA:   3'- -GCCGgCGCCGCuC-------------GGG-UGC-UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 31238 0.69 0.425317
Target:  5'- cCGGCC-CGGCGAGCgaGCGGgCgggCGAg -3'
miRNA:   3'- -GCCGGcGCCGCUCGggUGCUgGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 31764 0.67 0.541442
Target:  5'- -uGCgGCGGCGGGCgCGCG-CCgggCGGc -3'
miRNA:   3'- gcCGgCGCCGCUCGgGUGCuGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 32242 0.74 0.202739
Target:  5'- uGGCCGCGGCGAccGCcgCCGCcGCuCUCGAg -3'
miRNA:   3'- gCCGGCGCCGCU--CG--GGUGcUG-GAGCU- -5'
29505 3' -63.7 NC_006151.1 + 32784 0.7 0.332387
Target:  5'- gCGGCCGCGGgGGGCCgaaGCGGacgCGGa -3'
miRNA:   3'- -GCCGGCGCCgCUCGGg--UGCUggaGCU- -5'
29505 3' -63.7 NC_006151.1 + 35549 0.7 0.361642
Target:  5'- cCGGCCGuCGGgGaAGUCCGCGGCgaaaaUCGGc -3'
miRNA:   3'- -GCCGGC-GCCgC-UCGGGUGCUGg----AGCU- -5'
29505 3' -63.7 NC_006151.1 + 36128 0.71 0.321181
Target:  5'- gCGGCCGCGGCcgGAGCC-ACGAggccgccccguccucCUUCGGc -3'
miRNA:   3'- -GCCGGCGCCG--CUCGGgUGCU---------------GGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.