miRNA display CGI


Results 81 - 100 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 36503 0.72 0.267013
Target:  5'- cCGGU--CGGUGAGCCCgggccggcggcGCGGCCUCGGa -3'
miRNA:   3'- -GCCGgcGCCGCUCGGG-----------UGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 36639 0.68 0.45086
Target:  5'- cCGGCgGCGGCGGcGCCCccuccgccggagGgGACCgCGGu -3'
miRNA:   3'- -GCCGgCGCCGCU-CGGG------------UgCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 36745 0.66 0.550869
Target:  5'- uCGGCCGCuuGGCgcccgGAGCCC-CGucuCCUCc- -3'
miRNA:   3'- -GCCGGCG--CCG-----CUCGGGuGCu--GGAGcu -5'
29505 3' -63.7 NC_006151.1 + 37182 0.71 0.291834
Target:  5'- -cGCCGCGGCcccgcGGCCCuCGGCCUCc- -3'
miRNA:   3'- gcCGGCGCCGc----UCGGGuGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 37224 0.68 0.433737
Target:  5'- -cGCCGCGGCcuccccGGCCC-CGGCCcCGGa -3'
miRNA:   3'- gcCGGCGCCGc-----UCGGGuGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 37336 0.67 0.483483
Target:  5'- gGGCCGCugcucaccccgcucGGgGAGCCCugG-CC-CGGc -3'
miRNA:   3'- gCCGGCG--------------CCgCUCGGGugCuGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 37460 0.69 0.408776
Target:  5'- aGGCCGCGGCccgcuaccGCgCCGCGGCCg--- -3'
miRNA:   3'- gCCGGCGCCGcu------CG-GGUGCUGGagcu -5'
29505 3' -63.7 NC_006151.1 + 37568 0.73 0.233018
Target:  5'- gGGCCGcCGGCGAGgCCAUGuCCUgGc -3'
miRNA:   3'- gCCGGC-GCCGCUCgGGUGCuGGAgCu -5'
29505 3' -63.7 NC_006151.1 + 37751 0.67 0.522756
Target:  5'- gGGCCcugccgcacGCGGUGAGCgCCGUGGCCaUGAg -3'
miRNA:   3'- gCCGG---------CGCCGCUCG-GGUGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 37863 0.68 0.441396
Target:  5'- gGGCCGCGccGCGGaCCCccgcgccggggagGCGACCgUCGAg -3'
miRNA:   3'- gCCGGCGC--CGCUcGGG-------------UGCUGG-AGCU- -5'
29505 3' -63.7 NC_006151.1 + 37948 0.69 0.425317
Target:  5'- cCGGCCGCGugccccGCGAGCUgGCGgacGCCUgCGu -3'
miRNA:   3'- -GCCGGCGC------CGCUCGGgUGC---UGGA-GCu -5'
29505 3' -63.7 NC_006151.1 + 38055 0.77 0.12229
Target:  5'- cCGGCCGCccuCGGGCCCGCcuGCCUCGAg -3'
miRNA:   3'- -GCCGGCGcc-GCUCGGGUGc-UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 38136 0.67 0.522756
Target:  5'- cCGGCCgaGCGGCGgcAGgCCGCGGacucugucgcCCUCGu -3'
miRNA:   3'- -GCCGG--CGCCGC--UCgGGUGCU----------GGAGCu -5'
29505 3' -63.7 NC_006151.1 + 38278 0.69 0.384732
Target:  5'- uGGCCGCGGCccggcucgccGAggccGCCgCGCGGCC-CGGg -3'
miRNA:   3'- gCCGGCGCCG----------CU----CGG-GUGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 38391 0.75 0.180172
Target:  5'- cCGGCgGCGGCGGGCgCCcccucCGGCCUCc- -3'
miRNA:   3'- -GCCGgCGCCGCUCG-GGu----GCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 38572 0.66 0.560346
Target:  5'- aGcGCCGCGcGCccgGGGCCCGCcGCCcCGGg -3'
miRNA:   3'- gC-CGGCGC-CG---CUCGGGUGcUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 38634 0.68 0.45956
Target:  5'- gCGGCCcuccGCGGgGAcGgCCACGGCCaccgCGAc -3'
miRNA:   3'- -GCCGG----CGCCgCU-CgGGUGCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 38685 0.69 0.416997
Target:  5'- gGGCCcCGGCGcaAGCgCCGCucCCUCGGa -3'
miRNA:   3'- gCCGGcGCCGC--UCG-GGUGcuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 38780 0.66 0.589021
Target:  5'- cCGGCUcCGGCGcccgcucgGGCCCAUG-CC-CGAg -3'
miRNA:   3'- -GCCGGcGCCGC--------UCGGGUGCuGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 39155 0.66 0.589021
Target:  5'- cCGcGCCGCGGCG-GCCUcuCGGCgcugCUCGc -3'
miRNA:   3'- -GC-CGGCGCCGCuCGGGu-GCUG----GAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.