miRNA display CGI


Results 101 - 120 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 39345 0.66 0.560346
Target:  5'- uCGGCgcggCGCGGCGccGGCUCAuCGugCUgGAc -3'
miRNA:   3'- -GCCG----GCGCCGC--UCGGGU-GCugGAgCU- -5'
29505 3' -63.7 NC_006151.1 + 39407 0.67 0.529269
Target:  5'- cCGGCCGUGGgGGacuaccacgucuacGUCCGCGuccGCCUgGAc -3'
miRNA:   3'- -GCCGGCGCCgCU--------------CGGGUGC---UGGAgCU- -5'
29505 3' -63.7 NC_006151.1 + 39846 0.74 0.198038
Target:  5'- gCGGCCGcCGGggccucgcCGAGCuCCGCGGCCcCGAg -3'
miRNA:   3'- -GCCGGC-GCC--------GCUCG-GGUGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 40035 0.69 0.419482
Target:  5'- cCGcGCCGCcgccgggGGCGccguggagacccaccGGCCCGCGgggGCCUCGGg -3'
miRNA:   3'- -GC-CGGCG-------CCGC---------------UCGGGUGC---UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 40133 0.69 0.400657
Target:  5'- uCGGCgucCGCGGCGgcgacggccGGcCCCGCGGCCcgcUCGGg -3'
miRNA:   3'- -GCCG---GCGCCGC---------UC-GGGUGCUGG---AGCU- -5'
29505 3' -63.7 NC_006151.1 + 40575 0.69 0.384732
Target:  5'- gCGGCCGCGGCGgagGGCUCgGCGGCggaggaUCGu -3'
miRNA:   3'- -GCCGGCGCCGC---UCGGG-UGCUGg-----AGCu -5'
29505 3' -63.7 NC_006151.1 + 44657 0.75 0.178892
Target:  5'- uGGCCGCGGC-AGCCCgacacaugcgcacgGCGGCCggCGGc -3'
miRNA:   3'- gCCGGCGCCGcUCGGG--------------UGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 46727 0.67 0.495213
Target:  5'- gGGCCGgGGCcGGCCCGgGGUCggCGAa -3'
miRNA:   3'- gCCGGCgCCGcUCGGGUgCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 48670 0.72 0.279204
Target:  5'- -cGCCGgGGCaGGGgCCGgGGCCUCGAa -3'
miRNA:   3'- gcCGGCgCCG-CUCgGGUgCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 48721 0.68 0.433737
Target:  5'- cCGGcCCGCgaagGGCacGCCCGCGGCgUCGGc -3'
miRNA:   3'- -GCC-GGCG----CCGcuCGGGUGCUGgAGCU- -5'
29505 3' -63.7 NC_006151.1 + 49033 0.66 0.589021
Target:  5'- gGGCCG-GGCcaGGCCCACGGgCUgGc -3'
miRNA:   3'- gCCGGCgCCGc-UCGGGUGCUgGAgCu -5'
29505 3' -63.7 NC_006151.1 + 49841 0.78 0.110785
Target:  5'- aCGGCgGCGGCGGGCCCGCG-CUgggCGc -3'
miRNA:   3'- -GCCGgCGCCGCUCGGGUGCuGGa--GCu -5'
29505 3' -63.7 NC_006151.1 + 49955 0.66 0.598643
Target:  5'- uGGCCGCGGCccuGGCC---GGCCUCc- -3'
miRNA:   3'- gCCGGCGCCGc--UCGGgugCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 50008 0.68 0.45956
Target:  5'- gCGcGCCGCGcGCGcGGCCCGCGcggcGCCccCGGg -3'
miRNA:   3'- -GC-CGGCGC-CGC-UCGGGUGC----UGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 50115 0.66 0.550869
Target:  5'- cCGGuCCGCGGUGcgcGCCCgACGcCCacgCGAg -3'
miRNA:   3'- -GCC-GGCGCCGCu--CGGG-UGCuGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 50331 0.74 0.193431
Target:  5'- aCGGCCGCccGGCGccuGgCCGCGGCCUCc- -3'
miRNA:   3'- -GCCGGCG--CCGCu--CgGGUGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 50374 0.72 0.285464
Target:  5'- cCGGCgGgGGCGAGacgcgggcCCCGCGGuCCUCGc -3'
miRNA:   3'- -GCCGgCgCCGCUC--------GGGUGCU-GGAGCu -5'
29505 3' -63.7 NC_006151.1 + 50619 0.67 0.522756
Target:  5'- -cGCCGCGGCaGcGUgCACG-CCUCGGc -3'
miRNA:   3'- gcCGGCGCCG-CuCGgGUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 50646 0.67 0.512585
Target:  5'- aCGGCCGCGGgcggaccCGAGUCgugCGCGGCCg--- -3'
miRNA:   3'- -GCCGGCGCC-------GCUCGG---GUGCUGGagcu -5'
29505 3' -63.7 NC_006151.1 + 50691 0.73 0.23842
Target:  5'- -cGCCGCGGCaGcGUCCACG-CCUCGGc -3'
miRNA:   3'- gcCGGCGCCG-CuCGGGUGCuGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.