miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 141644 0.74 0.193431
Target:  5'- gCGGCggCGCGGCGGGgcCCCGCGGgCUCGu -3'
miRNA:   3'- -GCCG--GCGCCGCUC--GGGUGCUgGAGCu -5'
29505 3' -63.7 NC_006151.1 + 141394 0.66 0.579427
Target:  5'- gGGCaaacaGCGGCGuGUCCGgCGAUCggugCGGg -3'
miRNA:   3'- gCCGg----CGCCGCuCGGGU-GCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 140049 0.67 0.495213
Target:  5'- gCGGCCGCacgccaccgaGGCG-GCgCGCGugCUCc- -3'
miRNA:   3'- -GCCGGCG----------CCGCuCGgGUGCugGAGcu -5'
29505 3' -63.7 NC_006151.1 + 139917 0.66 0.589021
Target:  5'- cCGcGCCGCGGgcucgucgccgUGGGCCgC-CGuCCUCGAg -3'
miRNA:   3'- -GC-CGGCGCC-----------GCUCGG-GuGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 139654 0.75 0.171786
Target:  5'- gGGUCGCGGCGGGCgCGCcGCC-CGAc -3'
miRNA:   3'- gCCGGCGCCGCUCGgGUGcUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 139094 0.66 0.560346
Target:  5'- gGGCgCGCauGGCGcuGUUCACGACCcUCGGc -3'
miRNA:   3'- gCCG-GCG--CCGCu-CGGGUGCUGG-AGCU- -5'
29505 3' -63.7 NC_006151.1 + 138373 0.67 0.513506
Target:  5'- uGGCCcugaGCGuCGAcGCCCACGACCg--- -3'
miRNA:   3'- gCCGG----CGCcGCU-CGGGUGCUGGagcu -5'
29505 3' -63.7 NC_006151.1 + 138338 0.66 0.550869
Target:  5'- cCGGCaCGCGcGC-AGCCCGcCGGCC-CGc -3'
miRNA:   3'- -GCCG-GCGC-CGcUCGGGU-GCUGGaGCu -5'
29505 3' -63.7 NC_006151.1 + 137757 0.69 0.384732
Target:  5'- aCGGuCCGCGGCcuGGCgCGCGugCUCc- -3'
miRNA:   3'- -GCC-GGCGCCGc-UCGgGUGCugGAGcu -5'
29505 3' -63.7 NC_006151.1 + 137430 0.69 0.384732
Target:  5'- -cGCCGCGGgGuccgccuccgcGGCCUccuccgacgACGGCCUCGAg -3'
miRNA:   3'- gcCGGCGCCgC-----------UCGGG---------UGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 137162 0.67 0.486178
Target:  5'- uGGCCGCGcaCGAGCCgGCGGCgcaGAu -3'
miRNA:   3'- gCCGGCGCc-GCUCGGgUGCUGgagCU- -5'
29505 3' -63.7 NC_006151.1 + 136273 0.74 0.193431
Target:  5'- --cCCGCGGCcGGCCUACGACCUgCGGg -3'
miRNA:   3'- gccGGCGCCGcUCGGGUGCUGGA-GCU- -5'
29505 3' -63.7 NC_006151.1 + 135938 0.76 0.148327
Target:  5'- -uGCCGCGGgGAGCCCcucgcggcgcgggACGuCCUCGAg -3'
miRNA:   3'- gcCGGCGCCgCUCGGG-------------UGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 135620 0.71 0.304907
Target:  5'- aCGGCCGCGGC--GCCCGCaccACC-CGGa -3'
miRNA:   3'- -GCCGGCGCCGcuCGGGUGc--UGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 135490 0.72 0.279204
Target:  5'- gGGCCa-GGCG-GCgCGCGGCCUCGGc -3'
miRNA:   3'- gCCGGcgCCGCuCGgGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 135373 0.67 0.53207
Target:  5'- uGGCCGCGuGCG---CCGCGACCaCGGc -3'
miRNA:   3'- gCCGGCGC-CGCucgGGUGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 135023 0.68 0.45086
Target:  5'- gGGCaGCaGCGGGgCCGCGucguCCUCGGg -3'
miRNA:   3'- gCCGgCGcCGCUCgGGUGCu---GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 134800 0.8 0.08208
Target:  5'- aGGCCGCGGCG-GCCCGCgccgGACC-CGGa -3'
miRNA:   3'- gCCGGCGCCGCuCGGGUG----CUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 134753 0.72 0.285464
Target:  5'- cCGaGCagCGCGcGCgGGGCCCGCGGCUUCGGc -3'
miRNA:   3'- -GC-CG--GCGC-CG-CUCGGGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 134479 0.71 0.318424
Target:  5'- aCGGCCGCcacUGGGCCUACGuCUUCGGg -3'
miRNA:   3'- -GCCGGCGcc-GCUCGGGUGCuGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.