miRNA display CGI


Results 21 - 40 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 134074 0.67 0.486178
Target:  5'- uGGUgugUGCGaGCGAGCCCGUGACCguggaCGGa -3'
miRNA:   3'- gCCG---GCGC-CGCUCGGGUGCUGGa----GCU- -5'
29505 3' -63.7 NC_006151.1 + 133671 0.66 0.589021
Target:  5'- cCGGCgCgGCGGCGcGCCCccgagGCGGUCUCGu -3'
miRNA:   3'- -GCCG-G-CGCCGCuCGGG-----UGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 133459 0.66 0.589021
Target:  5'- uGGCCcCGGuCGAgGCCCgcgagGCGGCCgCGGg -3'
miRNA:   3'- gCCGGcGCC-GCU-CGGG-----UGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 133420 0.66 0.598643
Target:  5'- uGGCCGCGGacgcggGGGUCUugGCGGCCgaggCGc -3'
miRNA:   3'- gCCGGCGCCg-----CUCGGG--UGCUGGa---GCu -5'
29505 3' -63.7 NC_006151.1 + 133383 0.71 0.32535
Target:  5'- gCGGCCGgGGCGGcGgCCGgGGCCgagCGGg -3'
miRNA:   3'- -GCCGGCgCCGCU-CgGGUgCUGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 133278 0.67 0.486178
Target:  5'- gCGaGCCgGCGGCG-GCCCACG---UCGAg -3'
miRNA:   3'- -GC-CGG-CGCCGCuCGGGUGCuggAGCU- -5'
29505 3' -63.7 NC_006151.1 + 133155 0.68 0.45086
Target:  5'- uCGGCgGCGGCGcgGGCgUG-GGCCUCGGc -3'
miRNA:   3'- -GCCGgCGCCGC--UCGgGUgCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 133092 0.68 0.477222
Target:  5'- gCGGCCugcaggaaGCGGuCGAGCgCCGCGuCCgUCGu -3'
miRNA:   3'- -GCCGG--------CGCC-GCUCG-GGUGCuGG-AGCu -5'
29505 3' -63.7 NC_006151.1 + 132843 0.69 0.424481
Target:  5'- aCGGCCaccacggGCGGCcGGCCCGgGGCCgCGc -3'
miRNA:   3'- -GCCGG-------CGCCGcUCGGGUgCUGGaGCu -5'
29505 3' -63.7 NC_006151.1 + 132544 0.67 0.522756
Target:  5'- aCGGCCGCcacguacGCGGGCagcuccuccuCCACGGCCggGAc -3'
miRNA:   3'- -GCCGGCGc------CGCUCG----------GGUGCUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 132043 0.66 0.569867
Target:  5'- gCGGCgCGCGGC-AGCgCgGCGGagaacggcggcuCCUCGAc -3'
miRNA:   3'- -GCCG-GCGCCGcUCG-GgUGCU------------GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 131854 0.68 0.45956
Target:  5'- gCGGCCGagacGCGcGCCgGCGGCgUCGGg -3'
miRNA:   3'- -GCCGGCgc--CGCuCGGgUGCUGgAGCU- -5'
29505 3' -63.7 NC_006151.1 + 131779 0.67 0.495213
Target:  5'- gCGGCCGCgGGCGccgccgucgucAGCgcgccauccuCCuCGGCCUCGGc -3'
miRNA:   3'- -GCCGGCG-CCGC-----------UCG----------GGuGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 131733 0.7 0.338815
Target:  5'- aGGCgggGUGGCGGGCCCgggcgagGCGACCgucgCGGu -3'
miRNA:   3'- gCCGg--CGCCGCUCGGG-------UGCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 131116 0.77 0.119314
Target:  5'- cCGGCCGCGGCGcgggaggccgcGGCgCCGCGGCCgUCa- -3'
miRNA:   3'- -GCCGGCGCCGC-----------UCG-GGUGCUGG-AGcu -5'
29505 3' -63.7 NC_006151.1 + 130885 0.67 0.495213
Target:  5'- gCGGCgGCGGUgGAGgCgGCGGCCgUCGc -3'
miRNA:   3'- -GCCGgCGCCG-CUCgGgUGCUGG-AGCu -5'
29505 3' -63.7 NC_006151.1 + 130734 0.74 0.212433
Target:  5'- gCGGCCGCGGCGcAGCgCCACccacgacggcauGGCCagGAa -3'
miRNA:   3'- -GCCGGCGCCGC-UCG-GGUG------------CUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 130682 0.67 0.521828
Target:  5'- gGGgCGCGGCGcaggauguccgggGGCCCgacgggGCGGCC-CGGg -3'
miRNA:   3'- gCCgGCGCCGC-------------UCGGG------UGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 130625 0.66 0.569867
Target:  5'- uGGUCGCGGCucacGAGCgCCGCcgaGGCCgccugCGGc -3'
miRNA:   3'- gCCGGCGCCG----CUCG-GGUG---CUGGa----GCU- -5'
29505 3' -63.7 NC_006151.1 + 130375 0.69 0.425317
Target:  5'- gCGcGCCGCGGCGuccagcgcgaaGGCCaGCG-CCUCGc -3'
miRNA:   3'- -GC-CGGCGCCGC-----------UCGGgUGCuGGAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.