miRNA display CGI


Results 41 - 60 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 130284 0.67 0.486178
Target:  5'- aGGCCGCgGGCGcgcgccGGCCgACGGCg-CGGa -3'
miRNA:   3'- gCCGGCG-CCGC------UCGGgUGCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 129963 0.68 0.45086
Target:  5'- cCGGCaCGC-GCGAGCgCACGgcgcggaagGCCUCGu -3'
miRNA:   3'- -GCCG-GCGcCGCUCGgGUGC---------UGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 129866 0.67 0.541442
Target:  5'- aGGcCCGUGGCGucgcGCgCCGCcgccACCUCGGu -3'
miRNA:   3'- gCC-GGCGCCGCu---CG-GGUGc---UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 129829 0.68 0.433737
Target:  5'- gCGcGCgGCGGCGuAGCCCagcgacACGGCCUgGc -3'
miRNA:   3'- -GC-CGgCGCCGC-UCGGG------UGCUGGAgCu -5'
29505 3' -63.7 NC_006151.1 + 129459 0.73 0.233018
Target:  5'- aCGGCCGUGGgcgggaCGAGCCCGuccaGGuCCUCGGa -3'
miRNA:   3'- -GCCGGCGCC------GCUCGGGUg---CU-GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 128758 0.7 0.346794
Target:  5'- gCGGgCGCauguaguaGGCGuaccGCuCCACGGCCUCGGu -3'
miRNA:   3'- -GCCgGCG--------CCGCu---CG-GGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 128537 0.73 0.233018
Target:  5'- aGGCCaCGGCGGGCCCGcCGGCg-CGGu -3'
miRNA:   3'- gCCGGcGCCGCUCGGGU-GCUGgaGCU- -5'
29505 3' -63.7 NC_006151.1 + 128016 0.72 0.278584
Target:  5'- gGGCgGCGGCGAcggcgucugcgacGCCCGCGGCagcggCGGc -3'
miRNA:   3'- gCCGgCGCCGCU-------------CGGGUGCUGga---GCU- -5'
29505 3' -63.7 NC_006151.1 + 127395 0.83 0.04936
Target:  5'- gGGCCGCGGCcgagucgacggGAGCCCGCGgggucGCCUCGGc -3'
miRNA:   3'- gCCGGCGCCG-----------CUCGGGUGC-----UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 125237 0.66 0.589021
Target:  5'- nGGCC-CGGCGcuCCCcCGGCC-CGGc -3'
miRNA:   3'- gCCGGcGCCGCucGGGuGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 125208 0.66 0.569867
Target:  5'- gGGCCccGCGGCc--CCCGCGGCCgcccgUCGGg -3'
miRNA:   3'- gCCGG--CGCCGcucGGGUGCUGG-----AGCU- -5'
29505 3' -63.7 NC_006151.1 + 125156 0.66 0.559396
Target:  5'- uGGCgcagcuguaCGCGcGCGAGCUCGagcgccuCGGCCUCGc -3'
miRNA:   3'- gCCG---------GCGC-CGCUCGGGU-------GCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 125115 0.69 0.416997
Target:  5'- gGGCuuCGUGGUGGccuuccGCCCGCuGAUCUCGAa -3'
miRNA:   3'- gCCG--GCGCCGCU------CGGGUG-CUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 124674 0.66 0.579427
Target:  5'- aCGGCCugcGCGaGgGGGCCCACGgggaGCacaUCGGc -3'
miRNA:   3'- -GCCGG---CGC-CgCUCGGGUGC----UGg--AGCU- -5'
29505 3' -63.7 NC_006151.1 + 124139 0.67 0.504324
Target:  5'- aCGGUggUGCGGCugGAGCCCGagcaGGCCUgcccCGAg -3'
miRNA:   3'- -GCCG--GCGCCG--CUCGGGUg---CUGGA----GCU- -5'
29505 3' -63.7 NC_006151.1 + 124073 0.75 0.180172
Target:  5'- aCGGCCGUGcGCGcGgCCGCGACCgagCGGg -3'
miRNA:   3'- -GCCGGCGC-CGCuCgGGUGCUGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 124035 0.7 0.369231
Target:  5'- aGGCCcccgaCGGCGAGUaCgGCGACCUgGAc -3'
miRNA:   3'- gCCGGc----GCCGCUCG-GgUGCUGGAgCU- -5'
29505 3' -63.7 NC_006151.1 + 123917 0.74 0.202739
Target:  5'- gCGGCCGUGacGCGGGCCgccuCGGCCUCGc -3'
miRNA:   3'- -GCCGGCGC--CGCUCGGgu--GCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 123111 0.69 0.416997
Target:  5'- gCGGCgcucgGCGGCGAGCCUggcgcaguGCGugCgCGAg -3'
miRNA:   3'- -GCCGg----CGCCGCUCGGG--------UGCugGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 123052 0.68 0.442252
Target:  5'- cCGGCCGCGGCGc-UgCGCGACgC-CGAg -3'
miRNA:   3'- -GCCGGCGCCGCucGgGUGCUG-GaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.