miRNA display CGI


Results 61 - 80 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 122789 0.7 0.354163
Target:  5'- gCGGCugCGCGGCcucGCCCgACGagcGCCUCGAg -3'
miRNA:   3'- -GCCG--GCGCCGcu-CGGG-UGC---UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 122693 0.67 0.522756
Target:  5'- gCGGCCGUGG--AGCUCGCGcuCUUCGGg -3'
miRNA:   3'- -GCCGGCGCCgcUCGGGUGCu-GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 122613 0.67 0.522756
Target:  5'- aGGCgGU-GCGGGCCCuCGACCUg-- -3'
miRNA:   3'- gCCGgCGcCGCUCGGGuGCUGGAgcu -5'
29505 3' -63.7 NC_006151.1 + 122462 0.72 0.255255
Target:  5'- aCGGCgGCGGCGGGCgCCGaGGCCggggacgCGGg -3'
miRNA:   3'- -GCCGgCGCCGCUCG-GGUgCUGGa------GCU- -5'
29505 3' -63.7 NC_006151.1 + 122141 0.67 0.53207
Target:  5'- uCGGCCGUGGaCGAGUUccucgcgcgCACGAUCggCGGc -3'
miRNA:   3'- -GCCGGCGCC-GCUCGG---------GUGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 121371 0.66 0.57847
Target:  5'- gCGGaCgGCGGCGAggagaccGCCUuCGACUUUGGg -3'
miRNA:   3'- -GCC-GgCGCCGCU-------CGGGuGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 121329 0.76 0.148687
Target:  5'- gCGGCCGcCGaGCuGGUgCGCGACCUCGAg -3'
miRNA:   3'- -GCCGGC-GC-CGcUCGgGUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 121144 0.72 0.285464
Target:  5'- uGGCCGaCGGCGGGCCgCugGugCagaCGGc -3'
miRNA:   3'- gCCGGC-GCCGCUCGG-GugCugGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 121088 0.69 0.392642
Target:  5'- gGGCgGCGGCGccgGGCUgCACGACCacucgcUCGGg -3'
miRNA:   3'- gCCGgCGCCGC---UCGG-GUGCUGG------AGCU- -5'
29505 3' -63.7 NC_006151.1 + 121051 0.66 0.589021
Target:  5'- uGGCCugcccGCGcGUGGGCuUCACGugCUCGc -3'
miRNA:   3'- gCCGG-----CGC-CGCUCG-GGUGCugGAGCu -5'
29505 3' -63.7 NC_006151.1 + 120751 0.67 0.531136
Target:  5'- cCGGCCGCGucauggccuggguGCGGcGCCCgcuggcggacGCGGCCgacgCGGa -3'
miRNA:   3'- -GCCGGCGC-------------CGCU-CGGG----------UGCUGGa---GCU- -5'
29505 3' -63.7 NC_006151.1 + 120388 0.7 0.361642
Target:  5'- aCGGCCGUGGaCGuGCUCaACGGCC-CGc -3'
miRNA:   3'- -GCCGGCGCC-GCuCGGG-UGCUGGaGCu -5'
29505 3' -63.7 NC_006151.1 + 119452 0.74 0.188919
Target:  5'- gGGCCGCGGCGAcguggacgccguGCgCUACGuggccggcaGCCUCGAc -3'
miRNA:   3'- gCCGGCGCCGCU------------CG-GGUGC---------UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 119091 0.75 0.16533
Target:  5'- aGGCCGCGGCgcucggcgcguacguGAGCCgCGCGgccgGCCUCGu -3'
miRNA:   3'- gCCGGCGCCG---------------CUCGG-GUGC----UGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 118879 0.79 0.09783
Target:  5'- gCGGCggCGCGGCGGcgacgcggccGCCgGCGGCCUCGAg -3'
miRNA:   3'- -GCCG--GCGCCGCU----------CGGgUGCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 118791 0.7 0.376928
Target:  5'- uGGCgCGCGGCGcGGCgCACcuGGCCUuCGAc -3'
miRNA:   3'- gCCG-GCGCCGC-UCGgGUG--CUGGA-GCU- -5'
29505 3' -63.7 NC_006151.1 + 118462 0.7 0.376928
Target:  5'- uGGCCGCGGaCGcGCaCGCGGCCUa-- -3'
miRNA:   3'- gCCGGCGCC-GCuCGgGUGCUGGAgcu -5'
29505 3' -63.7 NC_006151.1 + 118213 0.68 0.468348
Target:  5'- uGGCCGUGGUGGcgggcGCCCGgaccacCGGgCUCGGc -3'
miRNA:   3'- gCCGGCGCCGCU-----CGGGU------GCUgGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 118151 0.68 0.467466
Target:  5'- -cGCCGCGGCGguGGCgCCGCuggugcgcggccuGACCgUCGAg -3'
miRNA:   3'- gcCGGCGCCGC--UCG-GGUG-------------CUGG-AGCU- -5'
29505 3' -63.7 NC_006151.1 + 117834 0.7 0.372297
Target:  5'- cCGGCCGgGGCGGGCcggacucuaccaccgCCGcCGACgUCGc -3'
miRNA:   3'- -GCCGGCgCCGCUCG---------------GGU-GCUGgAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.