miRNA display CGI


Results 81 - 100 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 117620 0.67 0.495213
Target:  5'- gGGCuCGCGcGCGAgcguGCCCACGugCa--- -3'
miRNA:   3'- gCCG-GCGC-CGCU----CGGGUGCugGagcu -5'
29505 3' -63.7 NC_006151.1 + 117535 0.69 0.392642
Target:  5'- gGGCCcccucccacGCGGCGAcGCgCCGCGGCCa-GAa -3'
miRNA:   3'- gCCGG---------CGCCGCU-CG-GGUGCUGGagCU- -5'
29505 3' -63.7 NC_006151.1 + 117081 0.68 0.468348
Target:  5'- aGGCgCGUGGuCGcGUCCACGccgGCCUCGu -3'
miRNA:   3'- gCCG-GCGCC-GCuCGGGUGC---UGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 116324 0.68 0.442252
Target:  5'- -cGCCGCGcucgcGCGGGCCCGCGGCgUa-- -3'
miRNA:   3'- gcCGGCGC-----CGCUCGGGUGCUGgAgcu -5'
29505 3' -63.7 NC_006151.1 + 116204 0.67 0.538625
Target:  5'- uGGCgCGCgcgagcgugauguuGGCGAGCcgcgCCACGGCCgagagcUCGAg -3'
miRNA:   3'- gCCG-GCG--------------CCGCUCG----GGUGCUGG------AGCU- -5'
29505 3' -63.7 NC_006151.1 + 116141 0.73 0.243926
Target:  5'- -aGCCGC-GCGAGCCCGCGAgCUUCa- -3'
miRNA:   3'- gcCGGCGcCGCUCGGGUGCU-GGAGcu -5'
29505 3' -63.7 NC_006151.1 + 115442 0.68 0.477222
Target:  5'- aGGUCGCGcGUGAuGCgCGCGGCCaUGAg -3'
miRNA:   3'- gCCGGCGC-CGCU-CGgGUGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 115117 0.7 0.369231
Target:  5'- gGcGCCGcCGGCGAcGCgCGCGugcGCCUCGGc -3'
miRNA:   3'- gC-CGGC-GCCGCU-CGgGUGC---UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 114920 0.66 0.569867
Target:  5'- aCGGCCcCGGCGucGCgCuCGGCCUCc- -3'
miRNA:   3'- -GCCGGcGCCGCu-CGgGuGCUGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 114242 0.71 0.32535
Target:  5'- uGGCCGC-GCGGGaCCCcucggagcGCGcCCUCGAg -3'
miRNA:   3'- gCCGGCGcCGCUC-GGG--------UGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 114143 0.69 0.384732
Target:  5'- cCGaGCCGCGGCucGGGCgCAgCGACCgcgCGGc -3'
miRNA:   3'- -GC-CGGCGCCG--CUCGgGU-GCUGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 114025 0.67 0.541442
Target:  5'- aCGGCCcCcGUGAcgcuGCCCuuCGACCUCGGc -3'
miRNA:   3'- -GCCGGcGcCGCU----CGGGu-GCUGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 113896 0.66 0.595754
Target:  5'- uCGGCCGC-GCGGcgcaagacgcugacGCgCGCGGCCcgCGAu -3'
miRNA:   3'- -GCCGGCGcCGCU--------------CGgGUGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 113800 0.71 0.304907
Target:  5'- aCGcGCUGCuGCG-GCgCCACGGCCUCGc -3'
miRNA:   3'- -GC-CGGCGcCGCuCG-GGUGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 113114 0.76 0.155303
Target:  5'- gGGCCGCGGacgcggacgccgcCGGGCCCGgcuacgcCGACCUCGc -3'
miRNA:   3'- gCCGGCGCC-------------GCUCGGGU-------GCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 112172 0.77 0.118434
Target:  5'- aCGGCCGCGGCGAagcgaucgcgccgcGCCCGCagcGCCUCc- -3'
miRNA:   3'- -GCCGGCGCCGCU--------------CGGGUGc--UGGAGcu -5'
29505 3' -63.7 NC_006151.1 + 111979 0.66 0.59768
Target:  5'- gGGUgGgGGUGAGCggugcggCUACGACgUCGAc -3'
miRNA:   3'- gCCGgCgCCGCUCG-------GGUGCUGgAGCU- -5'
29505 3' -63.7 NC_006151.1 + 111289 0.66 0.560346
Target:  5'- gGGUaCGCGGCcuGGCCCACGAacgCGGc -3'
miRNA:   3'- gCCG-GCGCCGc-UCGGGUGCUggaGCU- -5'
29505 3' -63.7 NC_006151.1 + 110957 0.67 0.522756
Target:  5'- gGGUC-CGGCGGGCguccuCCACGaucgcgugcGCCUCGGc -3'
miRNA:   3'- gCCGGcGCCGCUCG-----GGUGC---------UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 109958 0.67 0.486178
Target:  5'- uCGGCCGCGuCuGGCCCACccgggaggacuuGACCcgCGAg -3'
miRNA:   3'- -GCCGGCGCcGcUCGGGUG------------CUGGa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.