Results 81 - 100 of 385 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 99362 | 0.66 | 0.579427 |
Target: 5'- gCGGUCGuCGGCGGcgucguGCaCCGCcuCCUCGAc -3' miRNA: 3'- -GCCGGC-GCCGCU------CG-GGUGcuGGAGCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 60747 | 0.66 | 0.579427 |
Target: 5'- aGGCaGCGGCG-GCUCGCGAaggCGGu -3' miRNA: 3'- gCCGgCGCCGCuCGGGUGCUggaGCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 29140 | 0.66 | 0.579427 |
Target: 5'- -aGUCGCGG-GAGCgcgcgugacccgCCGCGACCUCu- -3' miRNA: 3'- gcCGGCGCCgCUCG------------GGUGCUGGAGcu -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 14064 | 0.66 | 0.579427 |
Target: 5'- gGGUgCGUGGCGgcccGGCCgACGGCaCUCGc -3' miRNA: 3'- gCCG-GCGCCGC----UCGGgUGCUG-GAGCu -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 58659 | 0.66 | 0.579427 |
Target: 5'- aGGgCGCGGCGcagGGCcgCCAUGACCgCGc -3' miRNA: 3'- gCCgGCGCCGC---UCG--GGUGCUGGaGCu -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 121371 | 0.66 | 0.57847 |
Target: 5'- gCGGaCgGCGGCGAggagaccGCCUuCGACUUUGGg -3' miRNA: 3'- -GCC-GgCGCCGCU-------CGGGuGCUGGAGCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 78663 | 0.66 | 0.57847 |
Target: 5'- gCGGCCGgGGCGcgggugcuggacgGGCuCUACGccggccgggGCCUCGu -3' miRNA: 3'- -GCCGGCgCCGC-------------UCG-GGUGC---------UGGAGCu -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 20220 | 0.66 | 0.579427 |
Target: 5'- gGGCCGCgcaGGCGAccccGCCCAagaaGAUCagGAg -3' miRNA: 3'- gCCGGCG---CCGCU----CGGGUg---CUGGagCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 68661 | 0.66 | 0.579427 |
Target: 5'- aCGGCCgGCGG--GGCCCGCGucacccuuauaACCUCc- -3' miRNA: 3'- -GCCGG-CGCCgcUCGGGUGC-----------UGGAGcu -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 89616 | 0.66 | 0.579427 |
Target: 5'- uGGCCGCGaggaugaggaGCGuGUgCGCGcCCUUGAc -3' miRNA: 3'- gCCGGCGC----------CGCuCGgGUGCuGGAGCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 104081 | 0.66 | 0.589021 |
Target: 5'- uGcGCCGCGcCGAGCagCACGcCUUCGAc -3' miRNA: 3'- gC-CGGCGCcGCUCGg-GUGCuGGAGCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 103056 | 0.66 | 0.589021 |
Target: 5'- uGGCCGaGGCGcaGGCgCACGggcACCUgGAg -3' miRNA: 3'- gCCGGCgCCGC--UCGgGUGC---UGGAgCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 98117 | 0.66 | 0.589021 |
Target: 5'- aGGCgCGCGcGCgccGAGCCCACGguuaguguGCC-CGGc -3' miRNA: 3'- gCCG-GCGC-CG---CUCGGGUGC--------UGGaGCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 64240 | 0.66 | 0.589021 |
Target: 5'- gGGCCGCGacggcggcGCGGGCC-ACGcUCUCGu -3' miRNA: 3'- gCCGGCGC--------CGCUCGGgUGCuGGAGCu -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 59614 | 0.66 | 0.589021 |
Target: 5'- aCGGCCccggaGGCGuaguGCCCguacACGGCCcCGAa -3' miRNA: 3'- -GCCGGcg---CCGCu---CGGG----UGCUGGaGCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 49033 | 0.66 | 0.589021 |
Target: 5'- gGGCCG-GGCcaGGCCCACGGgCUgGc -3' miRNA: 3'- gCCGGCgCCGc-UCGGGUGCUgGAgCu -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 21507 | 0.66 | 0.589021 |
Target: 5'- gCGGgcgucaCCGgGGCGGGCUCG-GGCUUCGGc -3' miRNA: 3'- -GCC------GGCgCCGCUCGGGUgCUGGAGCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 5246 | 0.66 | 0.589021 |
Target: 5'- gCGGCgGCGGCGggGGCCCgggggGCGGagggCGAg -3' miRNA: 3'- -GCCGgCGCCGC--UCGGG-----UGCUgga-GCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 24634 | 0.66 | 0.58806 |
Target: 5'- aGGUa--GGCGAGCCCGCGgagcacgGCC-CGGa -3' miRNA: 3'- gCCGgcgCCGCUCGGGUGC-------UGGaGCU- -5' |
|||||||
29505 | 3' | -63.7 | NC_006151.1 | + | 63481 | 0.66 | 0.58806 |
Target: 5'- gGGCgGCGGCGGcGCCCGaagaaggUGGCCa--- -3' miRNA: 3'- gCCGgCGCCGCU-CGGGU-------GCUGGagcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home