miRNA display CGI


Results 41 - 60 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29505 3' -63.7 NC_006151.1 + 13967 0.66 0.598643
Target:  5'- cCGGCCaUGGgggagcCGGGCCCGCGuCCcCGGg -3'
miRNA:   3'- -GCCGGcGCC------GCUCGGGUGCuGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 57474 0.66 0.598643
Target:  5'- cCGcGCCGCGGCG-GCCUcgcagGCGACg-CGc -3'
miRNA:   3'- -GC-CGGCGCCGCuCGGG-----UGCUGgaGCu -5'
29505 3' -63.7 NC_006151.1 + 64123 0.66 0.598643
Target:  5'- cCGGCgGUGGCGcGCCCGucuCgUCGAa -3'
miRNA:   3'- -GCCGgCGCCGCuCGGGUgcuGgAGCU- -5'
29505 3' -63.7 NC_006151.1 + 82010 0.66 0.598643
Target:  5'- gCGGCCGCGuGCGccGCCgACaGCUgggCGAg -3'
miRNA:   3'- -GCCGGCGC-CGCu-CGGgUGcUGGa--GCU- -5'
29505 3' -63.7 NC_006151.1 + 53941 0.66 0.598643
Target:  5'- -cGCCGCGGCGAGggacuugaaCCACG-CCagCGGc -3'
miRNA:   3'- gcCGGCGCCGCUCg--------GGUGCuGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 113896 0.66 0.595754
Target:  5'- uCGGCCGC-GCGGcgcaagacgcugacGCgCGCGGCCcgCGAu -3'
miRNA:   3'- -GCCGGCGcCGCU--------------CGgGUGCUGGa-GCU- -5'
29505 3' -63.7 NC_006151.1 + 67876 0.66 0.592867
Target:  5'- uGGCgCGCGcGCcAGCCCGCgGggcacagcgccagcaGCCUCGGg -3'
miRNA:   3'- gCCG-GCGC-CGcUCGGGUG-C---------------UGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 98117 0.66 0.589021
Target:  5'- aGGCgCGCGcGCgccGAGCCCACGguuaguguGCC-CGGc -3'
miRNA:   3'- gCCG-GCGC-CG---CUCGGGUGC--------UGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 103056 0.66 0.589021
Target:  5'- uGGCCGaGGCGcaGGCgCACGggcACCUgGAg -3'
miRNA:   3'- gCCGGCgCCGC--UCGgGUGC---UGGAgCU- -5'
29505 3' -63.7 NC_006151.1 + 104081 0.66 0.589021
Target:  5'- uGcGCCGCGcCGAGCagCACGcCUUCGAc -3'
miRNA:   3'- gC-CGGCGCcGCUCGg-GUGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 121051 0.66 0.589021
Target:  5'- uGGCCugcccGCGcGUGGGCuUCACGugCUCGc -3'
miRNA:   3'- gCCGG-----CGC-CGCUCG-GGUGCugGAGCu -5'
29505 3' -63.7 NC_006151.1 + 125237 0.66 0.589021
Target:  5'- nGGCC-CGGCGcuCCCcCGGCC-CGGc -3'
miRNA:   3'- gCCGGcGCCGCucGGGuGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 133459 0.66 0.589021
Target:  5'- uGGCCcCGGuCGAgGCCCgcgagGCGGCCgCGGg -3'
miRNA:   3'- gCCGGcGCC-GCU-CGGG-----UGCUGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 7758 0.66 0.589021
Target:  5'- -cGCCGgGGCGGGagaaCCGgaccCGAaCCUCGAg -3'
miRNA:   3'- gcCGGCgCCGCUCg---GGU----GCU-GGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 38780 0.66 0.589021
Target:  5'- cCGGCUcCGGCGcccgcucgGGCCCAUG-CC-CGAg -3'
miRNA:   3'- -GCCGGcGCCGC--------UCGGGUGCuGGaGCU- -5'
29505 3' -63.7 NC_006151.1 + 39155 0.66 0.589021
Target:  5'- cCGcGCCGCGGCG-GCCUcuCGGCgcugCUCGc -3'
miRNA:   3'- -GC-CGGCGCCGCuCGGGu-GCUG----GAGCu -5'
29505 3' -63.7 NC_006151.1 + 52859 0.66 0.589021
Target:  5'- gCGGCUGCuGCGuGGCCuCGCGguACCggUCGAa -3'
miRNA:   3'- -GCCGGCGcCGC-UCGG-GUGC--UGG--AGCU- -5'
29505 3' -63.7 NC_006151.1 + 133671 0.66 0.589021
Target:  5'- cCGGCgCgGCGGCGcGCCCccgagGCGGUCUCGu -3'
miRNA:   3'- -GCCG-G-CGCCGCuCGGG-----UGCUGGAGCu -5'
29505 3' -63.7 NC_006151.1 + 139917 0.66 0.589021
Target:  5'- cCGcGCCGCGGgcucgucgccgUGGGCCgC-CGuCCUCGAg -3'
miRNA:   3'- -GC-CGGCGCC-----------GCUCGG-GuGCuGGAGCU- -5'
29505 3' -63.7 NC_006151.1 + 9695 0.66 0.589021
Target:  5'- cCGGCCGCGG-GuGCCCGgGAgaCgggagCGAa -3'
miRNA:   3'- -GCCGGCGCCgCuCGGGUgCUg-Ga----GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.